Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   EG63_RS06440 Genome accession   NZ_CP007604
Coordinates   1318008..1319321 (-) Length   437 a.a.
NCBI ID   WP_038418109.1    Uniprot ID   -
Organism   Helicobacter pylori strain BM013A     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1313008..1324321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG63_RS06410 (EG63_06690) nadC 1313473..1314294 (-) 822 WP_038418105.1 carboxylating nicotinate-nucleotide diphosphorylase -
  EG63_RS06415 (EG63_06695) nadA 1314294..1315304 (-) 1011 WP_038418106.1 quinolinate synthase NadA -
  EG63_RS06420 (EG63_06700) - 1315294..1316097 (-) 804 WP_038418107.1 phosphatidylserine decarboxylase -
  EG63_RS06425 (EG63_06705) - 1316091..1316597 (-) 507 WP_000953107.1 DUF6115 domain-containing protein -
  EG63_RS06430 (EG63_06710) - 1316610..1317104 (-) 495 WP_180579814.1 hypothetical protein -
  EG63_RS06435 (EG63_06715) mqnP 1317097..1317981 (-) 885 WP_038418108.1 menaquinone biosynthesis prenyltransferase MqnP -
  EG63_RS06440 (EG63_06720) comEC/comE3 1318008..1319321 (-) 1314 WP_038418109.1 ComEC/Rec2 family competence protein Machinery gene
  EG63_RS06445 (EG63_06725) - 1319318..1320784 (-) 1467 WP_038418110.1 replicative DNA helicase -
  EG63_RS06450 (EG63_06730) - 1320795..1322189 (-) 1395 WP_038418111.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  EG63_RS06455 (EG63_06735) crdS 1322192..1323394 (-) 1203 WP_080279674.1 copper-sensing histidine kinase CrdS -
  EG63_RS06460 (EG63_06740) crdR 1323360..1324001 (-) 642 WP_038418113.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50221.21 Da        Isoelectric Point: 9.9010

>NTDB_id=121574 EG63_RS06440 WP_038418109.1 1318008..1319321(-) (comEC/comE3) [Helicobacter pylori strain BM013A]
MKDKTFQGAFELLATPKEYLWCGVFLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKFKFCSFLESLKSCFFQTYSFSLTRKHNFKSHVRHFIDSAHSNALVGNLYRALFIGDSL
NKDLRDKANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLVLACCIAIALLPKLLFSVGFLLSICGVWYIFLFLKHTQIFFKNSSFLVRSFQAIALS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHILSMPLTIPTISVPSPLWLLGVHLFLT
IVSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=121574 EG63_RS06440 WP_038418109.1 1318008..1319321(-) (comEC/comE3) [Helicobacter pylori strain BM013A]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTATGGTGTGGGGTGTTTTTAAG
CCTTTTGTTGGCAATCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCTTGAACG
CTCAAATTCTATTACAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTCTTAAAACTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCACAATTTTTTGGCAAGTTCAAATTTTGTTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACACAATTTCAAATCGCATG
TGCGCCATTTCATTGACAGCGCTCATTCCAACGCTTTAGTGGGTAATTTGTATCGAGCGTTATTCATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAAAGCCAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGTGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTGTTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATCTTAAGTTTTAAACTTTTGGTTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTATTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAATTTTTTTTAAAAATTCTTCTTTTTTGGTGCGATCTTTTCAAGCGATCGCTTTAAGC
GTGTTAGTGTTTTTGAACATGCTCATTATCGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTATTGGATCATA
TTTTAAGCATGCCTTTAACAATCCCTACGATTTCGGTTCCTTCACCCTTATGGCTTTTAGGGGTGCATTTGTTTTTAACG
ATTGTGAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-381)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.508

100

0.945

Multiple sequence alignment