Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | EG63_RS00100 | Genome accession | NZ_CP007604 |
| Coordinates | 13744..14007 (+) | Length | 87 a.a. |
| NCBI ID | WP_000584956.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain BM013A | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 8744..19007
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EG63_RS00075 (EG63_00075) | groES | 9030..9386 (-) | 357 | WP_000671934.1 | co-chaperone GroES | - |
| EG63_RS00080 (EG63_00085) | dnaG | 9673..11352 (+) | 1680 | WP_038417094.1 | DNA primase | - |
| EG63_RS00085 (EG63_00090) | - | 11349..12401 (+) | 1053 | WP_038417095.1 | MnmA/TRMU family protein | - |
| EG63_RS00090 (EG63_00095) | - | 12490..13317 (+) | 828 | WP_038417096.1 | DUF5718 family protein | - |
| EG63_RS00095 (EG63_00100) | comB2 | 13463..13744 (+) | 282 | WP_001272691.1 | TrbC/VirB2 family protein | Machinery gene |
| EG63_RS00100 (EG63_00105) | comB3 | 13744..14007 (+) | 264 | WP_000584956.1 | hypothetical protein | Machinery gene |
| EG63_RS00105 (EG63_00110) | comB4 | 14009..16372 (+) | 2364 | WP_038417097.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| EG63_RS00110 (EG63_00115) | - | 16678..18018 (+) | 1341 | WP_038417098.1 | COG3014 family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10006.08 Da Isoelectric Point: 9.5290
>NTDB_id=121559 EG63_RS00100 WP_000584956.1 13744..14007(+) (comB3) [Helicobacter pylori strain BM013A]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=121559 EG63_RS00100 WP_000584956.1 13744..14007(+) (comB3) [Helicobacter pylori strain BM013A]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAATGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATCGTGGCTAAAAGCAAAATAAAGACC
AAAACCAAATGTTATAGAGCGTAG
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAATGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATCGTGGCTAAAAGCAAAATAAAGACC
AAAACCAAATGTTATAGAGCGTAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
100 |
100 |
1 |