Detailed information
Bioinformatically predicted
Overview
| Name | comB2 | Type | Machinery gene |
| Locus tag | EG63_RS00095 | Genome accession | NZ_CP007604 |
| Coordinates | 13463..13744 (+) | Length | 93 a.a. |
| NCBI ID | WP_001272691.1 | Uniprot ID | K2KII6 |
| Organism | Helicobacter pylori strain BM013A | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 8463..18744
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EG63_RS00075 (EG63_00075) | groES | 9030..9386 (-) | 357 | WP_000671934.1 | co-chaperone GroES | - |
| EG63_RS00080 (EG63_00085) | dnaG | 9673..11352 (+) | 1680 | WP_038417094.1 | DNA primase | - |
| EG63_RS00085 (EG63_00090) | - | 11349..12401 (+) | 1053 | WP_038417095.1 | MnmA/TRMU family protein | - |
| EG63_RS00090 (EG63_00095) | - | 12490..13317 (+) | 828 | WP_038417096.1 | DUF5718 family protein | - |
| EG63_RS00095 (EG63_00100) | comB2 | 13463..13744 (+) | 282 | WP_001272691.1 | TrbC/VirB2 family protein | Machinery gene |
| EG63_RS00100 (EG63_00105) | comB3 | 13744..14007 (+) | 264 | WP_000584956.1 | hypothetical protein | Machinery gene |
| EG63_RS00105 (EG63_00110) | comB4 | 14009..16372 (+) | 2364 | WP_038417097.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| EG63_RS00110 (EG63_00115) | - | 16678..18018 (+) | 1341 | WP_038417098.1 | COG3014 family protein | - |
Sequence
Protein
Download Length: 93 a.a. Molecular weight: 10511.76 Da Isoelectric Point: 9.1450
>NTDB_id=121558 EG63_RS00095 WP_001272691.1 13463..13744(+) (comB2) [Helicobacter pylori strain BM013A]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGVF
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGVF
Nucleotide
Download Length: 282 bp
>NTDB_id=121558 EG63_RS00095 WP_001272691.1 13463..13744(+) (comB2) [Helicobacter pylori strain BM013A]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTTGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATCT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTGGCGAATTGGTTTATGGGAGTTTTTTAA
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTTGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATCT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTGGCGAATTGGTTTATGGGAGTTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB2 | Helicobacter pylori 26695 |
98.925 |
100 |
0.989 |