Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   ayp1020_RS08925 Genome accession   NZ_CP007601
Coordinates   1853473..1854138 (-) Length   221 a.a.
NCBI ID   WP_047796788.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. capitis strain AYP1020     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1848473..1859138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ayp1020_RS08905 (AYP1020_1814) - 1848595..1849467 (-) 873 WP_047796784.1 DUF4064 domain-containing protein -
  ayp1020_RS08910 (AYP1020_1815) - 1849695..1851518 (-) 1824 WP_233420416.1 FtsX-like permease family protein -
  ayp1020_RS08915 (AYP1020_1816) - 1851712..1852461 (-) 750 WP_047796786.1 ABC transporter ATP-binding protein -
  ayp1020_RS08920 (AYP1020_1817) braS 1852571..1853467 (-) 897 WP_047796787.1 sensor histidine kinase Regulator
  ayp1020_RS08925 (AYP1020_1818) braR 1853473..1854138 (-) 666 WP_047796788.1 response regulator transcription factor Regulator
  ayp1020_RS12430 (AYP1020_1819) - 1854169..1854321 (-) 153 WP_192940984.1 hypothetical protein -
  ayp1020_RS08930 (AYP1020_1820) - 1854648..1856132 (+) 1485 WP_047796789.1 alkaline phosphatase -
  ayp1020_RS08935 (AYP1020_1821) - 1856326..1857867 (-) 1542 WP_047796790.1 NAD(P)H-binding protein -
  ayp1020_RS12110 (AYP1020_1822) - 1858051..1858152 (-) 102 WP_016898541.1 SE2200 family small protein -
  ayp1020_RS08940 (AYP1020_1823) - 1858422..1859048 (+) 627 WP_047796791.1 FMN-dependent NADH-azoreductase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25504.30 Da        Isoelectric Point: 4.2609

>NTDB_id=121527 ayp1020_RS08925 WP_047796788.1 1853473..1854138(-) (braR) [Staphylococcus capitis subsp. capitis strain AYP1020]
MKILIVEDDLVIAESLANELSKWNYEVNVVENFDQIMEDFRETEPQLVLLDINLPTLNGFHWCQEMRKESNVPIMFISSR
TDNMDQIMAIQMGGDDFIEKPFNLSLTVAKIQALLRRTYDLSVSNDELDVNGCKLILDEAKLVKDDDAVQLSLTELQILK
MLFQNEGKYVSRTALIEKCWESENFIDDNTLAVNMTRLRKKLLSIGVDDFIETKKNVGYRV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=121527 ayp1020_RS08925 WP_047796788.1 1853473..1854138(-) (braR) [Staphylococcus capitis subsp. capitis strain AYP1020]
ATGAAGATTCTCATAGTCGAAGATGATTTAGTTATTGCTGAGAGCTTGGCTAATGAACTTTCAAAATGGAATTATGAAGT
GAATGTTGTTGAAAACTTTGATCAAATTATGGAAGATTTTCGTGAAACAGAACCACAACTAGTATTATTAGATATCAACT
TACCTACACTCAATGGATTTCATTGGTGCCAAGAAATGCGCAAAGAATCTAATGTTCCTATCATGTTTATTAGTTCGAGA
ACTGATAATATGGATCAAATTATGGCTATTCAAATGGGTGGCGATGACTTTATTGAGAAACCGTTCAATTTATCGCTAAC
AGTAGCGAAGATACAAGCGTTACTTCGCCGTACATACGATTTATCCGTATCAAATGATGAATTAGATGTGAATGGTTGCA
AGTTGATTCTTGATGAGGCGAAACTCGTAAAGGATGATGACGCTGTTCAATTGTCATTAACAGAACTTCAAATTTTGAAA
ATGCTATTCCAAAATGAAGGAAAATACGTGAGTCGTACAGCATTAATTGAAAAGTGTTGGGAATCTGAAAACTTTATCGA
TGACAATACCTTAGCAGTTAATATGACTAGATTACGCAAGAAGTTATTATCCATAGGCGTTGATGATTTTATTGAAACGA
AGAAAAATGTCGGATATAGGGTTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

82.805

100

0.828

Multiple sequence alignment