Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LMXYSN_RS13625 Genome accession   NZ_CP007583
Coordinates   2706226..2706708 (-) Length   160 a.a.
NCBI ID   WP_085645125.1    Uniprot ID   -
Organism   Listeria monocytogenes strain XYSN     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2701226..2711708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMXYSN_RS13585 (LMxysn_2638) - 2701856..2703175 (-) 1320 WP_085645109.1 PBSX family phage terminase large subunit -
  LMXYSN_RS13590 (LMxysn_2639) terS 2703168..2703908 (-) 741 WP_085645111.1 phage terminase small subunit -
  LMXYSN_RS13595 (LMxysn_2640) - 2703948..2704175 (-) 228 WP_085645113.1 hypothetical protein -
  LMXYSN_RS13600 (LMxysn_2641) - 2704436..2705008 (-) 573 WP_085645115.1 sigma-70 family RNA polymerase sigma factor -
  LMXYSN_RS13605 (LMxysn_2642) - 2705096..2705248 (-) 153 WP_085645117.1 DUF3954 domain-containing protein -
  LMXYSN_RS13610 (LMxysn_2643) - 2705289..2705672 (-) 384 WP_085645119.1 DUF2481 family protein -
  LMXYSN_RS13615 - 2705676..2706080 (-) 405 WP_085645121.1 DUF1064 domain-containing protein -
  LMXYSN_RS13620 (LMxysn_2645) - 2706025..2706207 (-) 183 WP_085645123.1 hypothetical protein -
  LMXYSN_RS13625 (LMxysn_2646) ssbA 2706226..2706708 (-) 483 WP_085645125.1 single-stranded DNA-binding protein Machinery gene
  LMXYSN_RS13630 (LMxysn_2647) - 2706708..2707064 (-) 357 WP_085645127.1 hypothetical protein -
  LMXYSN_RS13635 - 2707061..2707525 (-) 465 WP_085645129.1 class I SAM-dependent methyltransferase -
  LMXYSN_RS13640 (LMxysn_2649) - 2707522..2708442 (-) 921 WP_085645131.1 hypothetical protein -
  LMXYSN_RS13645 (LMxysn_2650) - 2708453..2709364 (-) 912 WP_085645133.1 RecT family recombinase -
  LMXYSN_RS13650 (LMxysn_2651) - 2709357..2710868 (-) 1512 WP_085645135.1 AAA family ATPase -
  LMXYSN_RS13655 (LMxysn_2652) - 2711101..2711289 (-) 189 WP_085645137.1 gp45 family putative tail fiber system protein -
  LMXYSN_RS13660 (LMxysn_2653) - 2711392..2711598 (-) 207 WP_068996268.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17605.32 Da        Isoelectric Point: 4.7621

>NTDB_id=121341 LMXYSN_RS13625 WP_085645125.1 2706226..2706708(-) (ssbA) [Listeria monocytogenes strain XYSN]
MMNRVVLVGRLTKDPDLRYTPAGAAVATFTLAVNRPFKNTQGEQEADFINCVVWRKPAENAANFLKKGSMAGVDGRVQTR
NYEDGDGKRVFVTEVVAESVQFLEPKNNNTGGSTSNNYQGEVNYSNNNQTSSYRADTSQKSDSFANEGNPIDINPDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=121341 LMXYSN_RS13625 WP_085645125.1 2706226..2706708(-) (ssbA) [Listeria monocytogenes strain XYSN]
ATGATGAATCGTGTAGTACTTGTAGGTCGATTAACCAAAGACCCGGATTTACGTTACACTCCAGCTGGCGCGGCTGTTGC
GACTTTTACGTTAGCGGTAAATCGCCCATTTAAAAATACACAAGGAGAACAAGAAGCAGATTTCATTAATTGTGTTGTTT
GGCGTAAACCGGCAGAGAACGCAGCTAATTTCTTGAAGAAAGGAAGCATGGCGGGCGTTGATGGACGTGTTCAAACTCGT
AATTATGAGGACGGCGACGGTAAACGCGTTTTCGTTACGGAAGTAGTTGCTGAATCAGTTCAATTCTTAGAGCCTAAAAA
TAACAACACAGGAGGCTCTACATCGAATAATTATCAAGGCGAGGTTAATTATTCAAATAACAATCAAACAAGCTCATATC
GAGCGGATACGAGCCAGAAGAGCGATTCATTTGCAAATGAAGGTAATCCGATTGATATTAATCCGGATGATTTGCCATTT
TGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.36

100

0.694
  ssb Latilactobacillus sakei subsp. sakei 23K

54.651

100

0.587
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

66.25

0.431

Multiple sequence alignment