Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   SD89_RS09585 Genome accession   NZ_CP010449
Coordinates   1934790..1935896 (+) Length   368 a.a.
NCBI ID   WP_053308689.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NGAS322     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1929790..1940896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD89_RS09565 (SD89_09595) hasA 1930468..1931727 (+) 1260 WP_047236069.1 hyaluronan synthase HasA -
  SD89_RS09570 (SD89_09600) hasB 1931763..1932971 (+) 1209 WP_009880737.1 UDP-glucose 6-dehydrogenase HasB -
  SD89_RS09575 (SD89_09605) hasC 1933153..1934067 (+) 915 WP_032465326.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  SD89_RS09580 (SD89_09610) yaaA 1934375..1934788 (+) 414 WP_002991446.1 S4 domain-containing protein YaaA -
  SD89_RS09585 (SD89_09615) recF 1934790..1935896 (+) 1107 WP_053308689.1 DNA replication/repair protein RecF Machinery gene
  SD89_RS09590 (SD89_09620) - 1935953..1936816 (-) 864 WP_023610738.1 GRP family sugar transporter -
  SD89_RS09595 (SD89_09625) guaB 1937019..1938500 (-) 1482 WP_002991454.1 IMP dehydrogenase -
  SD89_RS09600 (SD89_09630) trpS 1938778..1939800 (-) 1023 WP_002991455.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41811.71 Da        Isoelectric Point: 7.8294

>NTDB_id=121341 SD89_RS09585 WP_053308689.1 1934790..1935896(+) (recF) [Streptococcus pyogenes strain NGAS322]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDDLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQVDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=121341 SD89_RS09585 WP_053308689.1 1934790..1935896(+) (recF) [Streptococcus pyogenes strain NGAS322]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAACAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTAGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATGACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATCCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTGACAAAAGGAACCGTTCAAGTTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

63.115

99.457

0.628
  recF Bacillus subtilis subsp. subtilis str. 168

45.722

100

0.465

Multiple sequence alignment