Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   SD89_RS02185 Genome accession   NZ_CP010449
Coordinates   423956..424990 (+) Length   344 a.a.
NCBI ID   WP_002994331.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NGAS322     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 418956..429990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD89_RS02155 (SD89_02155) tsaE 420021..420482 (+) 462 WP_002988647.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SD89_RS02160 (SD89_02160) - 420457..420981 (+) 525 WP_032460224.1 GNAT family N-acetyltransferase -
  SD89_RS02165 (SD89_02165) brpA 420990..422273 (+) 1284 WP_053308233.1 biofilm formation/cell division transcriptional regulator BrpA -
  SD89_RS02170 (SD89_02170) - 422384..422740 (-) 357 WP_030126323.1 hypothetical protein -
  SD89_RS02175 (SD89_02175) - 422737..423156 (-) 420 WP_002983376.1 HIT family protein -
  SD89_RS02180 (SD89_02180) pptA 423228..423953 (+) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  SD89_RS02185 (SD89_02185) pptB 423956..424990 (+) 1035 WP_002994331.1 ABC transporter permease Regulator
  SD89_RS02190 (SD89_02190) ccrZ 425054..425845 (+) 792 WP_002983385.1 cell cycle regulator CcrZ -
  SD89_RS02195 (SD89_02195) trmB 425845..426480 (+) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SD89_RS02205 (SD89_02205) rimP 426739..427275 (+) 537 WP_002988815.1 ribosome maturation factor RimP -
  SD89_RS02210 (SD89_02210) nusA 427450..428607 (+) 1158 WP_023611711.1 transcription termination factor NusA -
  SD89_RS02215 (SD89_02215) rnpM 428623..428919 (+) 297 WP_002983486.1 RNase P modulator RnpM -
  SD89_RS02220 (SD89_02220) - 428912..429214 (+) 303 WP_002983488.1 YlxQ-related RNA-binding protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40242.46 Da        Isoelectric Point: 10.3713

>NTDB_id=121283 SD89_RS02185 WP_002994331.1 423956..424990(+) (pptB) [Streptococcus pyogenes strain NGAS322]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=121283 SD89_RS02185 WP_002994331.1 423956..424990(+) (pptB) [Streptococcus pyogenes strain NGAS322]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTGTCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43

  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427


Multiple sequence alignment