Detailed information NTG0121275

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: V429_RS20625
• Genome accession: NZ_CP007576
• Coordinates: 4616761..4617633 (+)
• Length: 290 a.a.
• NCBI ID: WP_016352170.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila pc104A strain PC-104A
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4611761..4622633

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V429_RS20605 (V429_21395)	nadC	4612066..4612923 (+)	858	WP_016352165.1	carboxylating nicotinate-nucleotide diphosphorylase	-
V429_RS23695	tapA	4613246..4613668 (+)	423	WP_016352167.1	type IVa pilus major pilin TapA	-
V429_RS20615 (V429_21405)	pilB	4613675..4615381 (+)	1707	WP_016352168.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
V429_RS20620 (V429_21410)	pilC	4615497..4616738 (+)	1242	WP_016352169.1	type II secretion system F family protein	Machinery gene
V429_RS20625 (V429_21415)	pilD	4616761..4617633 (+)	873	WP_016352170.1	A24 family peptidase	Machinery gene
V429_RS20630 (V429_21420)	coaE	4617653..4618267 (+)	615	WP_016352171.1	dephospho-CoA kinase	-
V429_RS20635 (V429_21425)	zapD	4618305..4619027 (+)	723	WP_016352172.1	cell division protein ZapD	-
V429_RS20640 (V429_21430)	yacG	4619037..4619231 (+)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
V429_RS20645 (V429_21435)	mutT	4619292..4619705 (-)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
V429_RS20650 (V429_21440)	-	4619714..4620898 (-)	1185	WP_016352174.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32464.76 Da
• Isoelectric Point: 6.7410

>NTDB_id=121275 V429_RS20625 WP_016352170.1 4616761..4617633(+) (pilD) [Aeromonas hydrophila pc104A strain PC-104A]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEERYNLMVPRSACPHCGHA
ITAIENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVTATFAPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLATFL

Nucleotide

• Length: 873 bp

>NTDB_id=121275 V429_RS20625 WP_016352170.1 4616761..4617633(+) (pilD) [Aeromonas hydrophila pc104A strain PC-104A]
ATGTTGCTGATCACTGACGTTTTTCACAGCTTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTCATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCAGAGACACAGCCGCAGCAGGAAGAACGCTACAACCTGATGGTGCCGCGTTCTGCCTGTCCTCATTGCGGCCACGCA
ATTACGGCCATAGAGAACATCCCCCTACTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCTATCTC
GGCCCGTTATCCTCTGGTAGAGCTGCTGACGGCCCTGCTCTCGCTGGTCGTCACCGCAACATTCGCACCGGGCTGGGGCT
TGCTGGCCGCCCTGCTGCTCACCTGGGTACTGGTGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCTGACCAG
CTGACCCTGCCATTGCTATGGGGCGGTCTGCTGTTCAATTTGGCTGGGGGATTTGTACCGCTGGCCGATGCGGTGATCGG
TGCGATGGCTGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGTTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAGCTGTTGGCGGCGCTGGGTGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTGTTGCTGCTCTCGTCGCTG
GTTGGCGCTTTCATCGGGATTGGTCTCATCCTGCTGCGCAACCATCATCAGAACAAACCCATCCCCTTCGGCCCCTATCT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCGCGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.839	98.621	0.6
pilD	Vibrio campbellii strain DS40M4	55.594	98.621	0.548
pilD	Acinetobacter baumannii D1279779	54.035	98.276	0.531
pilD	Acinetobacter nosocomialis M2	54.035	98.276	0.531
pilD	Neisseria gonorrhoeae MS11	48.872	91.724	0.448