Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   DK43_RS02610 Genome accession   NZ_CP007573
Coordinates   525415..526104 (+) Length   229 a.a.
NCBI ID   WP_003029931.1    Uniprot ID   A0AAI9NHY7
Organism   Streptococcus anginosus strain SA1     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 520415..531104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK43_RS02580 (DK43_02670) - 520787..521326 (+) 540 WP_003029925.1 YceD family protein -
  DK43_RS02585 (DK43_02675) - 521449..521676 (-) 228 WP_003029926.1 hypothetical protein -
  DK43_RS02590 (DK43_02680) - 521676..522404 (-) 729 WP_003029927.1 ABC transporter permease -
  DK43_RS02595 (DK43_02685) - 522388..523122 (-) 735 WP_003029928.1 ATP-binding cassette domain-containing protein -
  DK43_RS02600 (DK43_02690) - 523112..523777 (-) 666 WP_003029929.1 TetR/AcrR family transcriptional regulator -
  DK43_RS02605 (DK43_02695) gndA 523982..525406 (+) 1425 WP_003029930.1 NADP-dependent phosphogluconate dehydrogenase -
  DK43_RS02610 (DK43_02700) covR 525415..526104 (+) 690 WP_003029931.1 response regulator transcription factor Regulator
  DK43_RS02615 (DK43_02705) - 526315..528504 (+) 2190 WP_003029932.1 PTS transporter subunit IIBC -
  DK43_RS02620 (DK43_02710) - 528521..529336 (+) 816 WP_003029933.1 endonuclease/exonuclease/phosphatase family protein -
  DK43_RS02625 (DK43_02715) - 529383..529994 (-) 612 WP_022525076.1 hypothetical protein -
  DK43_RS02630 (DK43_02720) nrdR 530161..530634 (+) 474 WP_003029936.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26495.59 Da        Isoelectric Point: 6.5011

>NTDB_id=121202 DK43_RS02610 WP_003029931.1 525415..526104(+) (covR) [Streptococcus anginosus strain SA1]
MAKRILLVEKEKKLAQFIGLELQKEGYRVDLFETGKDALASARANQYDLFLLNFMLDDMTGTEFAAQLSVIKPASVIIVL
DHRDNILQYTEEIQRFAVAYMVEPFIVTDLVEKISAIFRGRDFIDQHCSQMKVPTSYRNLRIDVQNHTVYRGEEVIALTR
REYDLLATLMGSHQALSREQLLERVWKYEGAVETNVVDVYIRYLRSKIDIVGQKSYIKTVRGVGYAMQE

Nucleotide


Download         Length: 690 bp        

>NTDB_id=121202 DK43_RS02610 WP_003029931.1 525415..526104(+) (covR) [Streptococcus anginosus strain SA1]
ATGGCGAAGCGGATTTTATTAGTTGAGAAAGAAAAAAAGTTAGCACAATTTATTGGCTTAGAACTACAAAAAGAAGGTTA
TCGAGTTGATCTTTTTGAAACAGGAAAAGATGCTTTAGCGTCTGCGCGAGCGAATCAATACGATTTATTCCTGTTGAATT
TTATGCTTGACGATATGACAGGAACAGAATTTGCTGCACAATTAAGTGTGATAAAGCCTGCTTCGGTCATCATTGTATTG
GATCATCGTGACAATATTCTACAATATACTGAGGAAATCCAACGCTTTGCTGTTGCTTACATGGTAGAACCATTCATTGT
GACGGACTTAGTTGAAAAAATTTCTGCCATTTTTCGTGGACGTGATTTTATTGATCAGCATTGTAGTCAGATGAAAGTTC
CAACATCTTATCGGAATCTTCGGATTGATGTGCAAAATCATACAGTTTATCGAGGTGAAGAAGTGATTGCTTTGACTCGA
CGAGAATATGATTTATTAGCAACATTGATGGGAAGCCATCAAGCTTTAAGCCGTGAACAGCTGTTAGAGCGCGTGTGGAA
ATATGAAGGAGCTGTTGAAACAAATGTTGTTGATGTTTATATTCGCTATCTTCGTAGTAAAATTGATATAGTGGGGCAAA
AAAGTTATATAAAAACCGTGCGTGGTGTTGGTTATGCTATGCAAGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

48.261

100

0.485
  covR Lactococcus lactis subsp. lactis strain DGCC12653

45.415

100

0.454

Multiple sequence alignment