Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DK43_RS02180 Genome accession   NZ_CP007573
Coordinates   448106..449866 (+) Length   586 a.a.
NCBI ID   WP_003027423.1    Uniprot ID   A0AAI9NIH7
Organism   Streptococcus anginosus strain SA1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 443106..454866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK43_RS02160 (DK43_02240) scrK 444425..445324 (+) 900 WP_037582535.1 fructokinase ScrK -
  DK43_RS02165 (DK43_02245) - 445389..445799 (+) 411 WP_037582532.1 peptide deformylase -
  DK43_RS02170 (DK43_02250) - 445956..446414 (+) 459 WP_004224071.1 MarR family winged helix-turn-helix transcriptional regulator -
  DK43_RS02175 (DK43_02255) rcrP 446407..448116 (+) 1710 WP_041331570.1 ABC transporter ATP-binding protein Regulator
  DK43_RS02180 (DK43_02260) rcrQ 448106..449866 (+) 1761 WP_003027423.1 ABC transporter ATP-binding protein Regulator
  DK43_RS02185 (DK43_02265) - 450076..450390 (+) 315 WP_022525145.1 PTS cellobiose transporter subunit IIB -
  DK43_RS02190 (DK43_02270) - 450401..450721 (+) 321 WP_003027417.1 PTS cellobiose transporter subunit IIA -
  DK43_RS02195 (DK43_02275) - 450855..452252 (-) 1398 WP_003027414.1 glycoside hydrolase family 1 protein -
  DK43_RS02200 (DK43_02280) celB 452396..453664 (+) 1269 WP_003027411.1 PTS cellobiose transporter subunit IIC -
  DK43_RS02205 (DK43_02285) - 453698..454423 (+) 726 WP_003027408.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64871.84 Da        Isoelectric Point: 5.8465

>NTDB_id=121200 DK43_RS02180 WP_003027423.1 448106..449866(+) (rcrQ) [Streptococcus anginosus strain SA1]
MENKKSSLFSQVKPYLKGFQLPLLIAFVGAAVSSIITVYGPDKLKEITNLITEGMRSQIDLKAISNIALFLAILYAAGAL
LNYVQSFIISSVIQHFSKRLRTAIAEKINKLPLRYFDSHSQGDTLSRVTNDVDTVGQSLNQSLGAVISSSLLLIAVLFMM
FYNNVILSFVTIGSVLIGFVFVALIMGKSQRFFRAQQENLASVNGYVEEMYSGHNVIVSYNAAEESKAAFQTLNTNLYNS
MWKSQFISGIMMPLMMFVGNFGYVMVVLVGASMALNGDVTMGTIVAFMVYVRTFSQPLSQIAQGITTLQQASAAMGRVFE
FLAEPEMENDEHKAQQLTTLKGDVAFDNVFFGYNPDRTIIHDFSANAKAGQKIAIVGPTGAGKTTIVNLLMKFYEIEKGR
ITIDGIDTKQMKRSEVHDAFSMVLQDTWLFEGTIKENLIYNQKNISDEAVVAAAKAVGVHHFIKTLPKGYDTVLDDTVSL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGN
HEQLMEQNGFYADLYNSQFDEDAEYA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=121200 DK43_RS02180 WP_003027423.1 448106..449866(+) (rcrQ) [Streptococcus anginosus strain SA1]
ATGGAAAATAAAAAATCATCTTTATTTAGCCAAGTGAAACCTTATCTCAAAGGTTTTCAGCTTCCATTGCTCATTGCATT
TGTGGGAGCGGCAGTGTCTAGTATTATTACAGTTTATGGACCGGACAAATTAAAAGAAATTACCAACCTTATCACAGAGG
GAATGCGAAGTCAGATTGATTTGAAAGCAATCTCCAACATTGCTCTTTTCCTAGCGATTTTGTATGCAGCAGGTGCTTTG
TTAAATTACGTTCAATCTTTTATCATTTCATCTGTTATTCAGCATTTCTCCAAGCGTTTGCGGACTGCTATTGCTGAAAA
AATCAATAAATTACCATTGCGGTATTTTGACAGCCATTCTCAAGGGGATACTCTTTCACGGGTCACCAATGACGTGGATA
CGGTCGGACAGTCTTTGAACCAAAGTTTAGGAGCAGTCATATCCTCAAGTTTACTTCTTATTGCTGTTCTCTTTATGATG
TTTTACAACAATGTCATCCTTTCCTTTGTAACGATTGGCTCAGTCTTGATTGGCTTTGTCTTTGTTGCTTTGATTATGGG
CAAATCTCAACGATTTTTTCGAGCACAACAAGAAAATCTTGCCAGCGTTAATGGCTATGTAGAAGAAATGTACTCTGGGC
ATAATGTCATTGTCAGCTACAATGCCGCAGAGGAATCTAAAGCAGCCTTTCAAACGCTCAATACGAATCTTTACAACAGC
ATGTGGAAATCCCAATTTATTTCAGGGATTATGATGCCGCTTATGATGTTTGTAGGGAACTTCGGTTACGTTATGGTTGT
TTTGGTTGGAGCGAGCATGGCCTTGAATGGCGATGTCACTATGGGAACGATTGTTGCCTTTATGGTGTATGTACGGACTT
TCTCTCAACCGTTGTCACAAATTGCGCAAGGGATTACCACTCTTCAACAAGCTAGCGCTGCTATGGGACGCGTGTTTGAA
TTTTTAGCAGAGCCTGAAATGGAAAACGATGAGCACAAGGCGCAACAACTCACGACCTTAAAAGGCGATGTTGCCTTTGA
TAATGTATTCTTTGGTTACAATCCAGATCGAACGATTATTCATGATTTTTCTGCCAATGCAAAAGCAGGGCAAAAGATTG
CCATTGTCGGTCCGACCGGTGCTGGGAAGACGACGATCGTCAATTTGCTGATGAAATTCTATGAGATTGAGAAAGGGCGG
ATTACGATTGATGGTATTGATACGAAGCAAATGAAACGCTCTGAGGTACATGATGCCTTCTCCATGGTTCTTCAAGACAC
TTGGTTATTTGAGGGAACGATTAAGGAAAATTTGATTTACAATCAGAAAAATATTTCTGACGAAGCAGTTGTGGCAGCTG
CCAAAGCTGTTGGGGTTCATCACTTCATTAAGACTTTGCCAAAAGGATATGATACGGTGCTGGACGATACTGTGAGCCTC
TCTGTTGGGCAAAAGCAATTGCTAACCATTGCGCGTGCCCTTCTTAAGGATGCTCCATTGCTTATCTTGGACGAAGCGAC
TTCATCTGTTGATACACGGACGGAAGAGCTGATTCAAAAAGCGATGGATAAACTAATGGAAGGACGGACTTCCTTTGTCA
TTGCTCACCGTTTGTCAACGATTCGTAATGCTGACTTAATTTTGGTTATGCGAGATGGCAATATCATTGAACAAGGCAAT
CACGAACAATTGATGGAACAAAACGGCTTCTATGCTGATCTTTACAATAGTCAATTTGATGAAGACGCAGAATATGCGTA
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(23-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

71.993

99.317

0.715

Multiple sequence alignment