Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   D082_RS13465 Genome accession   NZ_CP007542
Coordinates   2945182..2948451 (-) Length   1089 a.a.
NCBI ID   WP_028947147.1    Uniprot ID   A0A068N039
Organism   Synechocystis sp. PCC 6714     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2940182..2953451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D082_RS13450 (D082_29640) - 2940646..2941122 (-) 477 WP_028947150.1 MEKHLA domain-containing protein -
  D082_RS13455 (D082_29650) - 2941179..2942063 (-) 885 WP_028947149.1 ABC transporter permease -
  D082_RS13460 (D082_29660) - 2942066..2945182 (-) 3117 WP_051738879.1 alpha-mannosidase -
  D082_RS13465 (D082_29670) pilL-C 2945182..2948451 (-) 3270 WP_028947147.1 hybrid sensor histidine kinase/response regulator Machinery gene
  D082_RS13470 (D082_29680) era 2948461..2949399 (-) 939 WP_028947146.1 GTPase Era -
  D082_RS13475 (D082_29690) - 2949843..2950880 (+) 1038 WP_369796119.1 RNA polymerase sigma factor, RpoD/SigA family -
  D082_RS13480 (D082_29700) - 2950921..2952516 (-) 1596 WP_028947144.1 photosystem II high light acclimation radical SAM protein -
  D082_RS13485 (D082_29720) - 2952713..2953194 (+) 482 Protein_2708 DUF1830 domain-containing protein -

Sequence

Protein


Download         Length: 1089 a.a.        Molecular weight: 119955.82 Da        Isoelectric Point: 4.3752

>NTDB_id=120743 D082_RS13465 WP_028947147.1 2945182..2948451(-) (pilL-C) [Synechocystis sp. PCC 6714]
MNSDPNPAQAFENWFEEDEEDAFTSLIGGEEENKGIEELDFGDLFEGEPTIIQGDGFGTAPPSQEEEPVRMTLDFNSPEA
ELDALFAEEDPPSTAIDPFESSSWLEIDQMMEAEPVAPAYQTSGGLDAEDLAELQDLLGVGDAVEPNATSPGLPDFASGP
PTDVIEGKVLLFADIDDLDGLIDAPVLDPSFSFAELESLIDTPVQKSFSTISHPFRVPVAVEEEDEDEFKDLEALLEQAD
SSLGGGIANVGSTRLPVRPRQVKSRSFEQTMRVPIKQLDNLSNLIGELVVKRNRLEQDQERLRQFLDNLLNQAQNLSDVG
GRMQDLYERTLLEGALLASRSAGGRHHSSKTTYPDARVTASSSSTMNDQPLDALEMDRFTGFHLLSQEMIELIVRVRESA
SDIQYLVDETDQVARTLRQVTTQLQEGMTKSRMVPFTQTADRLPRAIREVSMKLNKKVKLEVEGGDVLIDKMILEHLYNP
MTHLVNNAITHGIETPTERQKLGKSPEGHLAVRAFLQGNQTLITVSDDGAGINTEKVKQKAVEKGLITRMEAQSLSQSEV
YDLLFHAGFSTKDIADDFAGRGVGLDVVRTSLIDIRGAISIDSTVGKGTTFTIRLPLTLSICKALCCLSDRARIAFPMDG
VEDTRDYLPRDIVIDEDGQKCVKYGKESLLLPLYPLKDLLNYNRQLSRGSVYGGKQEDDVVRVIIARGSSGNLLALQIDQ
ILGEEEIVIKQIEGPIPKPPGIAGATVRGDGSIMPIADVLELIEIAQGRLRTDSSGGLWRKTLTPTANEVHMDPTVLIVD
DSITVRELLSLSFKKAGFRVEQARDGQEAWEQLKSGLPCDLVFCDIEMPRKNGLELLSELQADEELCSIPVALLTSRGAD
RHRKVAAKLGATGYFTKPYTEKDILDAANRMLNGEVLLPGSTRKTSSILSRFKKARGSFSEEAPTIVESTPGTLRSTVLI
IDDSVMVREMLSMTFKKADYHTETARDGQDAWEKLKSGLPCDLILCDIEMPRMNGLELLERIQEDPNLSRIPVAMITSRG
AQKMQRMAAEKGAKGYFVKPYIEETLLEASQRLMRGEVLLNLAAISADE

Nucleotide


Download         Length: 3270 bp        

>NTDB_id=120743 D082_RS13465 WP_028947147.1 2945182..2948451(-) (pilL-C) [Synechocystis sp. PCC 6714]
ATGAATAGCGATCCCAACCCAGCCCAGGCATTTGAAAATTGGTTTGAGGAAGATGAGGAAGACGCCTTTACTTCCCTCAT
TGGCGGTGAGGAGGAAAATAAGGGCATTGAGGAATTAGATTTTGGCGATCTGTTTGAGGGAGAACCCACCATCATCCAAG
GAGATGGATTTGGCACTGCCCCCCCTTCCCAGGAAGAAGAGCCGGTACGGATGACCCTGGATTTCAATTCCCCCGAAGCG
GAACTAGATGCGTTATTTGCCGAAGAAGATCCCCCCTCAACGGCGATCGACCCCTTTGAAAGCTCCAGTTGGCTAGAAAT
TGACCAAATGATGGAGGCTGAACCCGTCGCCCCGGCTTACCAAACCAGTGGCGGCCTAGATGCCGAAGACCTAGCCGAGT
TGCAGGATCTACTGGGAGTGGGAGATGCGGTCGAACCCAACGCCACTAGCCCCGGCTTACCCGACTTTGCCAGTGGTCCC
CCGACGGATGTGATAGAGGGCAAGGTGCTGCTTTTTGCCGACATCGATGACCTGGACGGTCTGATTGATGCGCCTGTCCT
TGATCCAAGTTTTTCCTTTGCAGAACTAGAAAGCCTCATTGACACGCCGGTGCAGAAATCCTTTAGCACCATCAGTCATC
CTTTCCGGGTGCCGGTGGCCGTCGAAGAAGAAGATGAGGATGAATTTAAAGACCTCGAAGCCCTTCTAGAACAGGCTGAT
AGTAGTCTGGGGGGAGGCATAGCTAATGTGGGCAGTACCCGGCTACCAGTCCGCCCCCGTCAGGTTAAATCCCGTAGTTT
TGAGCAAACCATGCGGGTACCCATTAAACAACTGGATAACCTGAGTAACTTAATCGGGGAACTTGTAGTTAAACGGAACC
GCCTCGAACAGGATCAGGAGCGTTTGCGCCAATTTTTGGATAATCTGCTCAACCAGGCCCAAAACCTCAGCGATGTGGGG
GGGCGTATGCAAGATTTGTATGAAAGAACTTTGTTAGAAGGGGCCCTGTTAGCCAGCCGTAGCGCTGGTGGCCGACACCA
CTCCTCGAAAACCACCTACCCTGATGCTAGGGTAACCGCTTCTAGCTCCTCCACTATGAATGACCAGCCCTTGGACGCGC
TGGAAATGGATCGTTTTACGGGCTTCCACCTCCTTTCCCAGGAGATGATTGAGTTAATTGTGCGGGTGCGGGAATCAGCT
TCGGATATCCAGTATCTAGTGGATGAAACGGACCAAGTGGCGCGAACCCTCAGACAGGTAACTACCCAACTCCAGGAGGG
AATGACTAAATCCCGTATGGTGCCCTTCACCCAAACGGCTGATCGCCTGCCACGGGCTATCCGGGAAGTTTCCATGAAAC
TCAATAAAAAGGTCAAATTGGAAGTAGAAGGGGGCGATGTGCTCATCGACAAGATGATCCTAGAACATCTTTACAACCCC
ATGACCCACCTGGTCAATAATGCCATTACCCACGGCATTGAAACCCCTACAGAAAGACAAAAGTTGGGTAAATCTCCGGA
GGGCCATCTGGCAGTGCGGGCATTTCTCCAAGGGAACCAAACGTTGATCACAGTCTCTGACGATGGGGCCGGCATAAATA
CAGAAAAAGTCAAACAAAAGGCAGTTGAAAAAGGATTAATTACTCGGATGGAGGCCCAGAGCCTGTCCCAATCGGAAGTC
TACGATCTTTTGTTCCATGCTGGTTTTAGCACCAAAGACATAGCCGACGACTTTGCTGGCCGGGGCGTAGGGCTAGACGT
AGTGCGTACTAGTTTAATTGACATTCGCGGGGCGATCAGCATTGACTCCACCGTGGGCAAAGGCACCACTTTTACCATTC
GTTTGCCCCTCACCCTCAGTATTTGCAAAGCCCTTTGTTGTCTAAGCGATCGGGCTCGCATTGCTTTTCCTATGGACGGA
GTAGAAGATACTAGGGACTATCTCCCCAGGGACATTGTCATCGATGAAGATGGTCAAAAATGTGTCAAATATGGCAAAGA
AAGCCTACTTTTACCTCTGTATCCCCTCAAAGACTTGCTCAACTACAACCGTCAACTGAGCCGGGGTAGTGTCTATGGCG
GCAAACAAGAGGATGATGTGGTGCGGGTGATTATCGCCCGGGGCAGTTCCGGTAACCTCCTGGCCCTCCAGATAGACCAG
ATATTGGGGGAAGAAGAAATAGTAATCAAACAAATTGAGGGCCCTATCCCCAAACCCCCAGGCATTGCTGGGGCTACCGT
ACGGGGGGATGGGAGCATCATGCCCATTGCCGACGTTTTGGAATTGATCGAAATAGCCCAAGGGCGGCTCCGCACCGACA
GCAGCGGTGGACTATGGCGCAAAACCCTCACCCCCACCGCCAACGAAGTGCATATGGATCCCACTGTGCTGATTGTGGAC
GACTCCATTACCGTGCGGGAATTGTTGTCCCTCAGTTTTAAAAAGGCTGGTTTCCGGGTGGAACAGGCCCGGGATGGCCA
GGAAGCTTGGGAACAGTTAAAGTCAGGTTTGCCCTGTGACTTGGTTTTTTGTGACATTGAAATGCCGCGCAAGAATGGCT
TGGAACTGCTGTCTGAGCTCCAGGCAGACGAAGAACTTTGCTCTATTCCAGTGGCTCTACTCACCTCCCGGGGAGCCGAT
CGCCATCGTAAAGTAGCAGCCAAACTGGGGGCAACGGGATATTTCACCAAGCCCTATACGGAAAAAGATATTTTGGATGC
GGCCAACCGGATGTTGAATGGGGAAGTGCTGTTACCAGGGAGTACCCGCAAAACCAGCTCTATTCTTTCCCGCTTCAAAA
AAGCCCGGGGTAGTTTCTCCGAAGAGGCTCCCACCATTGTGGAAAGTACCCCCGGTACCCTCCGTTCCACAGTATTAATC
ATTGATGACTCGGTTATGGTGCGGGAAATGCTGTCCATGACTTTCAAAAAAGCCGACTACCATACGGAAACCGCCCGGGA
TGGCCAGGATGCTTGGGAAAAACTTAAATCTGGCCTGCCCTGTGATTTGATCCTCTGTGACATTGAAATGCCTCGTATGA
ACGGTTTGGAACTGCTGGAGCGCATTCAGGAAGACCCCAATCTTTCCCGTATTCCAGTGGCCATGATCACTTCCCGGGGG
GCACAAAAAATGCAACGTATGGCTGCGGAAAAAGGAGCCAAAGGTTACTTTGTGAAACCCTACATTGAAGAAACTTTATT
GGAAGCCAGTCAACGGTTAATGAGGGGAGAAGTGTTGCTGAATTTGGCCGCCATAAGTGCAGATGAATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(481-618)

CheW-like domain (CheW)

(624-764)

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(269-325)

Response regulator receiver domain (Response_reg)

(796-908)

Response regulator receiver domain (Response_reg)

(958-1069)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A068N039

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

91.522

100

0.922

Multiple sequence alignment