Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   D082_RS06870 Genome accession   NZ_CP007542
Coordinates   1539486..1540160 (+) Length   224 a.a.
NCBI ID   WP_028948505.1    Uniprot ID   A0A068MVF1
Organism   Synechocystis sp. PCC 6714     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1534486..1545160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D082_RS06850 (D082_15330) - 1535298..1536011 (+) 714 WP_238546872.1 hypothetical protein -
  D082_RS06855 (D082_15340) - 1536129..1536767 (+) 639 WP_028948502.1 histidine phosphatase family protein -
  D082_RS06860 (D082_15360) - 1537006..1538211 (+) 1206 WP_038530441.1 SGNH/GDSL hydrolase family protein -
  D082_RS06865 (D082_15370) - 1538304..1539464 (+) 1161 WP_028948504.1 cysteine desulfurase family protein -
  D082_RS06870 (D082_15380) comF 1539486..1540160 (+) 675 WP_028948505.1 ComF family protein Machinery gene
  D082_RS06875 (D082_15390) - 1540269..1540883 (+) 615 WP_028948506.1 L,D-transpeptidase -
  D082_RS06880 (D082_15400) - 1541015..1541350 (+) 336 WP_028948507.1 DUF433 domain-containing protein -
  D082_RS06885 (D082_15410) - 1541519..1542163 (-) 645 WP_028948508.1 Uma2 family endonuclease -
  D082_RS06890 (D082_15420) bchB 1542508..1544034 (+) 1527 WP_028948509.1 ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit B -
  D082_RS06895 (D082_15430) - 1544166..1544846 (+) 681 WP_028948510.1 TrkA family potassium uptake protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25345.29 Da        Isoelectric Point: 10.4570

>NTDB_id=120731 D082_RS06870 WP_028948505.1 1539486..1540160(+) (comF) [Synechocystis sp. PCC 6714]
MWQSIRSLLFQTPCPLCQKPSQDQFCRDCTGQIFSHCFAPNLPQWQGNFPRFVWGQYEGQLRRALTVMKFEQQPDIGIWL
GEQLAQAWLKQPQAKLRIRPQVVPIPLSNRKQAERGFNQAERIAAGFCRLTGYVLRPQALRRVKDTQALFGLGPGDRRRE
LQSALATGPAFNPHHPWLIVDDIITTGTTALEARRAMEEKGAKVLGIVAIAAPSFSRTMELGQH

Nucleotide


Download         Length: 675 bp        

>NTDB_id=120731 D082_RS06870 WP_028948505.1 1539486..1540160(+) (comF) [Synechocystis sp. PCC 6714]
ATGTGGCAATCAATTCGCTCCCTCCTCTTTCAAACTCCCTGTCCCCTTTGTCAAAAACCCAGCCAGGATCAGTTTTGTCG
GGATTGCACTGGACAAATTTTCAGCCATTGTTTTGCCCCTAACCTCCCGCAATGGCAAGGAAATTTTCCCCGCTTTGTTT
GGGGCCAGTATGAAGGACAACTGCGGCGGGCCTTGACGGTGATGAAATTTGAGCAACAGCCCGACATTGGCATTTGGCTG
GGAGAACAGCTTGCCCAAGCATGGCTTAAACAACCCCAAGCTAAACTTAGAATACGTCCCCAGGTGGTGCCCATTCCCCT
CAGTAACCGCAAACAAGCTGAACGGGGATTTAACCAAGCTGAAAGAATTGCCGCTGGTTTTTGCCGCCTGACTGGTTATG
TTCTACGCCCCCAAGCATTGCGACGGGTTAAAGATACCCAAGCTCTGTTTGGTCTTGGCCCAGGCGATCGCCGCCGGGAA
TTACAATCAGCTTTAGCCACGGGGCCAGCGTTTAACCCCCATCACCCTTGGTTAATAGTGGACGACATTATAACTACCGG
CACCACCGCCCTAGAAGCCCGACGGGCCATGGAAGAAAAGGGAGCTAAAGTGTTGGGCATCGTGGCGATCGCCGCACCGT
CTTTTTCTCGGACTATGGAACTTGGACAGCACTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(178-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A068MVF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Synechocystis sp. PCC 6803

86.161

100

0.862

Multiple sequence alignment