Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   D082_RS06785 Genome accession   NZ_CP007542
Coordinates   1518813..1520429 (-) Length   538 a.a.
NCBI ID   WP_238546871.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6714     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1513813..1525429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D082_RS06760 (D082_15140) - 1514024..1515646 (+) 1623 WP_028948486.1 Ppx/GppA phosphatase family protein -
  D082_RS06765 (D082_15150) ruvX 1515828..1516286 (+) 459 WP_028948487.1 Holliday junction resolvase RuvX -
  D082_RS06770 (D082_15160) - 1516399..1518048 (+) 1650 WP_028948488.1 sodium:proton antiporter -
  D082_RS18055 (D082_15170) - 1518063..1518800 (+) 738 WP_081857624.1 DUF190 domain-containing protein -
  D082_RS06785 (D082_15180) comA 1518813..1520429 (-) 1617 WP_238546871.1 phospholipase D-like domain-containing protein Machinery gene
  D082_RS06795 (D082_15190) - 1520720..1522297 (+) 1578 WP_028948491.1 ABC transporter permease subunit -
  D082_RS06800 (D082_15200) - 1522393..1524138 (+) 1746 WP_028948492.1 iron uptake porin -
  D082_RS18740 (D082_15210) - 1524268..1524423 (-) 156 WP_193386680.1 hypothetical protein -

Sequence

Protein


Download         Length: 538 a.a.        Molecular weight: 59771.45 Da        Isoelectric Point: 5.8701

>NTDB_id=120730 D082_RS06785 WP_238546871.1 1518813..1520429(-) (comA) [Synechocystis sp. PCC 6714]
MFTLALVVAIAIIGISKFDPSGLGQSLARTDPLPQQQNIKVYFNLNDAKGADFIDPDRDFKRQGDNFEQIIIEQINQAQS
SIDLAVQELRLPRIAQALVEKQAAGVRVRLVLENIYNQTIKEAVEANRDPYRYRAPLAYLDQNQDGRISATESAERDAVE
ILRTHKIPLIDDTEDGSKGSGLMHHKFVVVDNKTIIVTSANFTPSDQYGDYDDHFTRGNANNLLVIQSPAVAHLFTEEFN
LLWGDGPGGEKNSLFAINKPRRAAKVVKVGETQVTVKFSPDRRAVPFAETSNGLIAQYLNQAQQRIQLALFVFSEQQLSN
VINQRFQAGTEVKALIDRGFAFRYYSEGLDLLGVTLLENCLEQPGNAPWPLATEFVGTPALPRGDKLHHKFALVDDDTVI
TGSHNWSPAANHNNDETVLVLRNPQIAVHYQRELDRLYGIAEYGLPPTVQARIERQEQECANPQPSPKPLAKATPNRLVN
LNRGSQEELESLPGIGPSTAEKIITTREQKAFTSLEDLGRVKGIGPSKIEGLRGKVTW

Nucleotide


Download         Length: 1617 bp        

>NTDB_id=120730 D082_RS06785 WP_238546871.1 1518813..1520429(-) (comA) [Synechocystis sp. PCC 6714]
TTGTTTACCCTAGCTCTGGTGGTGGCGATCGCCATTATTGGCATCAGCAAATTTGATCCATCGGGGTTGGGGCAATCCCT
AGCCCGGACCGATCCTCTGCCCCAACAGCAGAATATTAAAGTTTATTTCAACCTCAATGATGCCAAAGGAGCTGATTTCA
TCGATCCCGACCGCGATTTTAAACGCCAGGGGGACAATTTTGAGCAAATAATCATAGAGCAAATTAACCAAGCCCAATCC
AGCATTGACCTAGCGGTGCAGGAATTGCGCTTACCCCGCATTGCCCAAGCATTGGTGGAGAAACAAGCGGCCGGTGTACG
GGTCAGGTTGGTGCTGGAAAATATCTATAATCAAACCATTAAAGAAGCGGTGGAGGCGAATAGGGATCCCTACCGTTACC
GTGCTCCCCTAGCCTATTTGGATCAAAATCAGGACGGTCGCATCAGCGCCACAGAAAGTGCTGAACGGGATGCCGTCGAA
ATTCTCCGCACCCACAAAATTCCCCTCATTGATGACACGGAGGATGGCAGTAAAGGATCAGGGTTAATGCACCATAAGTT
CGTGGTGGTGGACAACAAAACGATCATTGTTACCTCCGCTAACTTCACCCCCAGCGATCAGTACGGGGATTATGACGATC
ATTTCACCAGGGGCAATGCAAATAATTTATTAGTCATACAATCCCCTGCGGTGGCCCACCTTTTCACTGAGGAATTTAAT
TTGCTTTGGGGAGACGGCCCCGGGGGAGAAAAAAATAGTTTATTTGCCATTAATAAACCCAGAAGGGCCGCTAAAGTAGT
CAAAGTCGGGGAAACCCAGGTGACCGTGAAATTTTCCCCCGATCGCCGGGCGGTGCCTTTTGCGGAAACAAGTAATGGTT
TAATTGCCCAATATTTGAACCAGGCCCAGCAAAGGATTCAGTTGGCTTTGTTTGTTTTTAGTGAACAGCAATTATCCAAT
GTGATTAATCAAAGATTTCAGGCCGGTACGGAGGTTAAAGCTTTAATTGATCGGGGATTTGCCTTTCGTTACTACAGCGA
AGGACTGGATTTATTGGGGGTAACCCTATTGGAAAATTGCTTAGAACAACCCGGTAATGCCCCTTGGCCCTTGGCGACGG
AATTTGTCGGGACACCGGCCCTACCCAGGGGGGATAAATTACATCATAAATTTGCCCTGGTGGATGATGATACTGTGATC
ACTGGTTCCCACAATTGGTCCCCCGCCGCTAACCATAACAATGATGAAACGGTGTTGGTTTTACGGAACCCCCAAATAGC
AGTCCATTACCAACGGGAATTAGATCGACTCTACGGCATTGCGGAATACGGTTTACCCCCCACAGTACAAGCCCGTATTG
AGCGCCAGGAACAGGAATGTGCTAATCCCCAACCCAGTCCTAAACCTTTGGCCAAGGCCACCCCGAATCGTTTAGTTAAC
CTTAATCGGGGTAGTCAGGAGGAACTGGAAAGTTTACCGGGTATTGGCCCCAGCACCGCTGAAAAAATTATTACCACCAG
GGAACAAAAGGCGTTCACCTCCCTAGAAGATTTAGGGCGAGTTAAAGGTATTGGCCCTAGTAAGATCGAGGGTCTGCGGG
GAAAAGTTACCTGGTAA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(295-437)

PLD-like domain (PLDc_2)

(71-243)

Helix-hairpin-helix motif (HHH_3)

(477-537)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

89.533

99.442

0.89

Multiple sequence alignment