Detailed information NTG0120634

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: SH05_RS06005
• Genome accession: NZ_CP010438
• Coordinates: 1216733..1218007 (+)
• Length: 424 a.a.
• NCBI ID: WP_001575516.1
• Uniprot ID: -
• Organism: Escherichia coli K-12 strain K-12 MG1655
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1211733..1223007

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SH05_RS05980 (SH05_05975)	yajG	1212896..1213474 (-)	579	WP_001295326.1	lipoprotein	-
SH05_RS05985 (SH05_05980)	bolA	1213779..1214096 (+)	318	WP_000973448.1	transcriptional regulator BolA	-
SH05_RS05995 (SH05_05990)	tig	1214440..1215738 (+)	1299	WP_001198386.1	trigger factor	-
SH05_RS06000 (SH05_05995)	clpP	1215984..1216607 (+)	624	WP_000122253.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
SH05_RS06005 (SH05_06000)	clpX	1216733..1218007 (+)	1275	WP_001575516.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
SH05_RS06010 (SH05_06005)	lon	1218195..1220549 (+)	2355	WP_038432497.1	endopeptidase La	-
SH05_RS06015 (SH05_06010)	hupB	1220758..1221030 (+)	273	WP_001043542.1	nucleoid-associated protein HU-beta	-

Sequence

Protein

• Length: 424 a.a.
• Molecular weight: 46355.02 Da
• Isoelectric Point: 5.0727

>NTDB_id=120634 SH05_RS06005 WP_001575516.1 1216733..1218007(+) (clpX) [Escherichia coli K-12 strain K-12 MG1655]
MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHEIRNHLDDYVIG
QEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVEN
IIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT
SKILFICGGAFAGLNKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEE
ALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDE
SVIDGQSKPLLIYGKPEAQQASGE

Nucleotide

• Length: 1275 bp

>NTDB_id=120634 SH05_RS06005 WP_001575516.1 1216733..1218007(+) (clpX) [Escherichia coli K-12 strain K-12 MG1655]
ATGACAGATAAACGCAAAGATGGCTCAGGCAAATTGCTGTATTGCTCTTTTTGCGGCAAAAGCCAGCATGAAGTGCGCAA
GCTGATTGCCGGTCCATCCGTGTATATCTGCGACGAATGTGTTGATTTATGTAACGACATCATTCGCGAAGAGATTAAAG
AAGTTGCACCGCATCGTGAACGCAGTGCGCTACCGACGCCGCATGAAATTCGCAACCACCTGGACGATTACGTTATCGGC
CAGGAACAGGCGAAAAAAGTGCTGGCGGTCGCGGTATACAACCATTACAAACGTCTGCGCAACGGCGATACCAGCAATGG
CGTCGAGTTGGGCAAAAGTAACATTCTGCTGATCGGTCCGACCGGTTCCGGTAAAACGCTGCTGGCTGAAACGCTGGCGC
GCCTGCTGGATGTTCCGTTCACCATGGCCGACGCGACTACACTGACCGAAGCCGGTTATGTGGGTGAAGACGTTGAAAAC
ATCATTCAGAAGCTGTTGCAGAAATGCGACTACGATGTCCAGAAAGCACAGCGTGGTATTGTCTACATCGATGAAATCGA
CAAGATTTCTCGTAAGTCAGACAACCCGTCCATTACCCGAGACGTTTCCGGTGAAGGCGTACAGCAGGCACTGTTGAAAC
TGATCGAAGGTACGGTAGCTGCTGTTCCACCGCAAGGTGGGCGTAAACATCCGCAGCAGGAATTCTTGCAGGTTGATACC
TCTAAGATCCTGTTTATTTGTGGCGGTGCGTTTGCCGGTCTGAATAAAGTGATTTCCCACCGTGTAGAAACCGGCTCCGG
CATTGGTTTTGGCGCGACGGTAAAAGCGAAGTCCGACAAAGCAAGCGAAGGCGAGCTGCTGGCGCAGGTTGAACCGGAAG
ATCTGATCAAGTTTGGTCTTATCCCTGAGTTTATTGGTCGTCTGCCGGTTGTCGCAACGTTGAATGAACTGAGCGAAGAA
GCTCTGATTCAGATCCTCAAAGAGCCGAAAAACGCCCTGACCAAGCAGTATCAGGCGCTGTTTAATCTGGAAGGCGTGGA
TCTGGAATTCCGTGACGAGGCGCTGGATGCTATCGCTAAGAAAGCGATGGCGCGTAAAACCGGTGCCCGTGGCCTGCGTT
CCATCGTAGAAGCCGCACTGCTCGATACCATGTACGATCTGCCGTCCATGGAAGACGTCGAAAAAGTGGTTATCGACGAG
TCGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (112-310)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (317-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (13-50)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	59.85	94.575	0.566
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.392	96.226	0.533