Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMA510612_RS11505 Genome accession   NZ_CP007524
Coordinates   1843928..1844392 (-) Length   154 a.a.
NCBI ID   WP_010981060.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 510612     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1838928..1849392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMA510612_RS09710 (NMA510612_2146) - 1840212..1840484 (-) 273 WP_002234162.1 ACT domain-containing protein -
  NMA510612_RS09715 (NMA510612_2148) - 1840610..1841347 (-) 738 WP_002216708.1 toxin-antitoxin system YwqK family antitoxin -
  NMA510612_RS09720 (NMA510612_2150) prmB 1841628..1842527 (-) 900 WP_002232685.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  NMA510612_RS09725 (NMA510612_2151) - 1842672..1843265 (+) 594 WP_002246348.1 hypothetical protein -
  NMA510612_RS09730 (NMA510612_2152) - 1843377..1843814 (+) 438 Protein_1833 HK97 family phage prohead protease -
  NMA510612_RS11505 comE 1843928..1844392 (-) 465 WP_010981060.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16529.75 Da        Isoelectric Point: 10.6993

>NTDB_id=120336 NMA510612_RS11505 WP_010981060.1 1843928..1844392(-) (comE) [Neisseria meningitidis strain 510612]
MLCPEKMSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=120336 NMA510612_RS11505 WP_010981060.1 1843928..1844392(-) (comE) [Neisseria meningitidis strain 510612]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACAGTATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCGGTCGGTGCGCCCGCACCAAAAGGCCCAGCCAAACCAGTGCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747

Multiple sequence alignment