Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   CY96_RS17705 Genome accession   NZ_CP007512
Coordinates   3521643..3522881 (-) Length   412 a.a.
NCBI ID   WP_000990688.1    Uniprot ID   A0A9W5QDY8
Organism   Bacillus bombysepticus str. Wang     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3516643..3527881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CY96_RS17680 (CY96_17965) spoVS 3516727..3516987 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  CY96_RS17685 (CY96_17970) - 3517137..3517931 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  CY96_RS17690 (CY96_17975) rny 3518094..3519659 (-) 1566 WP_000099770.1 ribonuclease Y -
  CY96_RS17695 - 3520140..3520562 (-) 423 Protein_3486 DNA recombination/repair protein RecA -
  CY96_RS17700 recA 3520890..3521498 (-) 609 Protein_3487 recombinase RecA -
  CY96_RS17705 (CY96_17985) cinA 3521643..3522881 (-) 1239 WP_000990688.1 competence/damage-inducible protein CinA Machinery gene
  CY96_RS17710 (CY96_17990) pgsA 3522902..3523480 (-) 579 WP_001052970.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CY96_RS17715 (CY96_17995) - 3523545..3524471 (-) 927 WP_044584805.1 helix-turn-helix domain-containing protein -
  CY96_RS17720 (CY96_18000) - 3524493..3525278 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  CY96_RS17725 (CY96_18005) - 3525417..3525665 (-) 249 WP_000114450.1 DUF3243 domain-containing protein -
  CY96_RS17730 (CY96_18010) - 3525741..3526454 (-) 714 WP_000759606.1 SDR family oxidoreductase -
  CY96_RS17735 (CY96_18015) - 3526555..3527841 (-) 1287 WP_000725319.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45479.80 Da        Isoelectric Point: 5.3499

>NTDB_id=120211 CY96_RS17705 WP_000990688.1 3521643..3522881(-) (cinA) [Bacillus bombysepticus str. Wang]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIEAAEERADILIFTGGLGPTKDDLTKET
IAASLDEELVYDEKALALISNYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGVNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVSEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKRKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLRVPEEV
LHTDGAVSKECARYLAENVKDVLKADIGISFTGVAGPDASEQKEPGTVFVGLSIKDEPTVVFPLNLSGSRQQIRERTAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=120211 CY96_RS17705 WP_000990688.1 3521643..3522881(-) (cinA) [Bacillus bombysepticus str. Wang]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTATCATACTGTTGTTGGTGATAATAATAAGCGATTGCAAAAGGCGATTG
AAGCTGCGGAAGAACGTGCTGATATACTTATTTTTACAGGTGGATTAGGACCAACAAAAGATGATTTAACGAAAGAAACG
ATAGCTGCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAGCCTTAATAAGTAATTACTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAAGCGCTCGTTTTAAATGGAGCAACAGTATTTGCAAATGACCACGGTATGG
CGCCTGGTATGGGGGTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGGCCGCCAAAAGAAATGAAACCAATGTAT
GTAAGTTACGTAGAGCCTTTTTTACGTAATTTTACAACAGGAGAAAACATTTATTCTCGTGTGCTTCGTTTCTTCGGTAT
TGGGGAGTCCCAATTAGAGGTGAAAGTGCAAGATTTAATTGATGGACAAACAAACCCAACAATCGCCCCGTTAGCAAATG
ATGGAGAAGTGACATTACGTTTAACCGCTAAGCATCAAAATGTTAGCGAAGCGGAGAAATTAATTCAACATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGAATTTTTGCATTATAAGGCAATCGAGTTATTGAA
GAGAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACTGAAAACGCTGGTG
TTTCTTCTGTGTTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACGTGTGCCTGAAGAAGTG
TTGCATACTGATGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGATGTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGGCCAGATGCTTCAGAACAGAAAGAACCAGGAACAGTATTTGTTGGGCTTTCGA
TTAAGGATGAACCAACTGTAGTCTTTCCTCTTAATTTAAGCGGAAGTCGTCAACAAATTAGAGAACGAACAGCAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(258-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.252

100

0.583
  cinA Streptococcus pneumoniae TIGR4

46.778

100

0.476
  cinA Streptococcus mitis SK321

46.539

100

0.473
  cinA Streptococcus pneumoniae Rx1

46.301

100

0.471
  cinA Streptococcus pneumoniae R6

46.301

100

0.471
  cinA Streptococcus pneumoniae D39

46.062

100

0.468
  cinA Streptococcus mitis NCTC 12261

46.062

100

0.468
  cinA Streptococcus mutans UA159

45.98

96.602

0.444
  cinA Streptococcus suis isolate S10

40.318

91.505

0.369

Multiple sequence alignment