Detailed information NTG0120125

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: GBS85147_RS09800
• Genome accession: NZ_CP010319
• Coordinates: 1973307..1974416 (+)
• Length: 369 a.a.
• NCBI ID: WP_000264871.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae strain GBS85147
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1968307..1979416

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GBS85147_RS09775 (GBS85147_1971)	-	1968679..1969518 (-)	840	WP_000181757.1	energy-coupling factor ABC transporter ATP-binding protein	-
GBS85147_RS09780 (GBS85147_1972)	pgsA	1969518..1970060 (-)	543	WP_000239222.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
GBS85147_RS09785 (GBS85147_1973)	yfmH	1970183..1971466 (-)	1284	WP_000217765.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
GBS85147_RS09790 (GBS85147_1974)	yfmF	1971468..1972712 (-)	1245	WP_000706188.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
GBS85147_RS09795 (GBS85147_1975)	yaaA	1972951..1973304 (+)	354	WP_000384867.1	S4 domain-containing protein YaaA	-
GBS85147_RS09800 (GBS85147_1976)	recF	1973307..1974416 (+)	1110	WP_000264871.1	DNA replication/repair protein RecF	Machinery gene
GBS85147_RS09805 (GBS85147_1977)	-	1974428..1975294 (-)	867	WP_000398683.1	GRP family sugar transporter	-
GBS85147_RS09810 (GBS85147_1978)	-	1975350..1976012 (-)	663	WP_001865840.1	helix-turn-helix transcriptional regulator	-
GBS85147_RS09815 (GBS85147_1979)	guaB	1976087..1977568 (-)	1482	WP_000073440.1	IMP dehydrogenase	-
GBS85147_RS09820 (GBS85147_1980)	-	1977725..1978210 (-)	486	WP_001034427.1	arginine repressor	-
GBS85147_RS09825 (GBS85147_1981)	-	1978220..1978900 (-)	681	WP_000628848.1	Crp/Fnr family transcriptional regulator	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42484.36 Da
• Isoelectric Point: 7.8456

>NTDB_id=120125 GBS85147_RS09800 WP_000264871.1 1973307..1974416(+) (recF) [Streptococcus agalactiae strain GBS85147]
MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVHFKHHDVQITGEVIRKSGH
LSLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVLFAPEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQR
NTYLKTTNNVDKTFLSVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFTDKSSIREHFLN
QLSKSHSRDIFKKNTSIGPHRDDITFFINDINATFGSQGQQRSLILSLKLAEIELIKTVTNDYPILLLDDVMSELDNHRQ
LKLLEGIKKNVQTFITTTSLEHLSALPDQLKIFNISDGTISINEKKATD

Nucleotide

• Length: 1110 bp

>NTDB_id=120125 GBS85147_RS09800 WP_000264871.1 1973307..1974416(+) (recF) [Streptococcus agalactiae strain GBS85147]
ATGTGGATAAAAAATATTTCTTTAAAACATTATCGTAATTATGAAGAAGCACAAGTAGATTTTTCACCCAACCTCAATAT
TTTCATTGGCCGCAATGCTCAAGGAAAGACAAATTTTTTAGAAGCAATCTACTTCTTGGCTTTGACTCGAAGTCATCGTA
CCCGTTCTGATAAAGAACTTGTACATTTTAAACACCATGATGTACAAATTACAGGTGAGGTAATCCGCAAAAGCGGCCAT
CTTAGCTTAGATATTCAATTATCTGAAAAAGGAAGAATCACTAAGGTTAACCATCTTAAACAGGCAAAATTATCTGATTA
TATTGGGGCTATGACTGTCGTACTTTTTGCCCCTGAAGATCTTCAATTAGTTAAAGGTGCACCTAGCCTAAGACGGAAAT
TTTTAGATATAGATATTGGACAAATTAAGCCAACGTACTTAGCTGAACTTTCAAATTACAATCATGTATTAAAACAAAGA
AACACTTATCTAAAAACTACTAATAACGTCGACAAAACTTTTTTATCAGTCCTTGATGAACAATTAGCTGATTATGGAAG
TCGTGTCATTGAACACCGTTTTGATTTTATCCAAGCCCTAAATGATGAAGCGGACAAGCATCACTACATTATCAGTACTG
AGTTAGAACATTTATCTATTCACTACAAATCGTCAATAGAGTTTACAGATAAGTCAAGTATTAGGGAACATTTTTTAAAC
CAATTATCTAAAAGCCACTCAAGAGACATCTTTAAGAAAAACACAAGCATCGGGCCTCATCGTGATGATATTACTTTCTT
TATTAATGATATCAATGCTACTTTTGGTAGCCAAGGGCAACAAAGAAGCCTTATTTTATCATTGAAATTAGCAGAAATTG
AGCTAATAAAAACCGTTACCAACGATTATCCGATTCTCTTACTTGACGACGTTATGAGTGAACTTGACAACCATCGTCAA
CTAAAACTCTTAGAGGGAATCAAAAAGAATGTTCAAACATTTATTACTACAACAAGTTTAGAACATTTAAGTGCTTTACC
TGATCAACTCAAAATCTTTAACATTAGTGATGGTACTATTAGTATTAATGAAAAAAAAGCAACAGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	63.912	98.374	0.629
recF	Bacillus subtilis subsp. subtilis str. 168	44.565	99.729	0.444