Detailed information NTG0119749

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: RN69_RS21985
• Genome accession: NZ_CP010313
• Coordinates: 4661619..4664033 (+)
• Length: 804 a.a.
• NCBI ID: WP_014494656.1
• Uniprot ID: A0ABY3QCX8
• Organism: Bradyrhizobium japonicum strain E109
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 4656619..4669033

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RN69_RS21970 (RN69_22105)	-	4657561..4659411 (-)	1851	WP_014494652.1	D-alanyl-D-alanine carboxypeptidase	-
RN69_RS21975 (RN69_22110)	-	4659800..4660138 (+)	339	WP_014494653.1	phasin family protein	-
RN69_RS21980 (RN69_22115)	clpS	4660995..4661327 (+)	333	WP_014494655.1	ATP-dependent Clp protease adapter ClpS	-
RN69_RS21985 (RN69_22120)	clpC	4661619..4664033 (+)	2415	WP_014494656.1	ATP-dependent Clp protease ATP-binding subunit ClpA	Regulator
RN69_RS21990 (RN69_22125)	-	4664105..4664560 (-)	456	WP_014494657.1	PEGA domain-containing protein	-
RN69_RS21995 (RN69_22130)	-	4664683..4666104 (-)	1422	WP_014494658.1	MFS transporter	-
RN69_RS22000 (RN69_22135)	-	4666290..4667315 (-)	1026	WP_014494659.1	aldo/keto reductase	-
RN69_RS22005 (RN69_22140)	-	4667431..4667622 (-)	192	WP_014494660.1	hypothetical protein	-
RN69_RS22010 (RN69_22145)	-	4667767..4668723 (-)	957	WP_014494661.1	helix-turn-helix domain-containing protein	-

Sequence

Protein

• Length: 804 a.a.
• Molecular weight: 88342.70 Da
• Isoelectric Point: 6.8696

>NTDB_id=119749 RN69_RS21985 WP_014494656.1 4661619..4664033(+) (clpC) [Bradyrhizobium japonicum strain E109]
MPTFSQSLEQSLHRALAIANERHHQYATLEHLLLSLIDDSDAAAVMRACSVDLDKLRTSLVNYLETEFENLVTDGADDAK
PTAGFQRVIQRAVIHVQSSGREEVTGANVLIAIFAERESHAAYFLQEQDMTRYDAVNYISHGIAKRPGVSEARPVRGVDE
ETEAKGTEDAKKKGEALETYCVNLNKKARDGKIDPVIGRNSEINRAIQVLCRRQKNNPLFVGEAGVGKTAIAEGLAKRIV
DSEVPEVLAAATVFSLDMGTLLAGTRYRGDFEERLKQVLKELEAHPNAILFIDEIHTVIGAGATSGGAMDASNLLKPALA
SGTIRCMGSTTYKEYRQHFEKDRALVRRFQKIDINEPTVEDAIAILKGLKPYFEDYHRLKYTNEAIEAAVQLSSRYIHDR
KLPDKAIDVIDESGAAQMLVAENKRKKTIGIKEIETTIASMARIPPKSVSKDDAEVLKHLEQTLKRTVFGQDKAIESLAA
SIKLARAGLREPEKPIGCYLFSGPTGVGKTEVAKQLAASLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDG
VDQHPHCVVLLDEIEKAHPDLYNVLLQIMDHGRLTDHNGKQVNFRNVILIMTTNAGASDLAKQAFGFTRSKREGDDHEAI
NRQFAPEFRNRLDAIVSFGHLSVEVIGTVVEKFVLQLEAQLGDRDVTIELSEPAKTWLVQHGYDEQMGARPMARVIQEHI
KKPLADEVLFGKLKGGGHVRVVLVKDEADETKDKIGFEFLDGPITPKQEKLPGARKRPPGKSKPGGGGSGGSKGPTSKGP
LVKA

Nucleotide

• Length: 2415 bp

>NTDB_id=119749 RN69_RS21985 WP_014494656.1 4661619..4664033(+) (clpC) [Bradyrhizobium japonicum strain E109]
ATGCCGACTTTTTCCCAAAGCCTTGAACAATCCCTGCATCGTGCGCTGGCGATCGCAAACGAGCGTCATCACCAATACGC
GACGCTCGAGCATCTCTTGCTCTCCCTGATCGACGACTCCGATGCAGCCGCCGTCATGCGCGCCTGTAGCGTCGATCTCG
ACAAGCTCCGCACGAGCCTCGTCAATTATCTTGAGACCGAATTCGAGAATCTGGTGACGGATGGCGCCGACGACGCCAAG
CCGACCGCCGGTTTCCAGCGCGTGATCCAGCGCGCGGTGATCCACGTGCAGTCGTCCGGCCGCGAAGAGGTGACCGGCGC
CAACGTGCTGATCGCGATCTTCGCCGAACGCGAGAGCCATGCCGCGTACTTCCTGCAGGAGCAGGACATGACGCGCTATG
ACGCCGTCAACTACATTAGCCACGGCATCGCCAAGCGGCCGGGCGTCTCCGAGGCGCGGCCGGTGCGCGGCGTCGACGAG
GAGACCGAGGCAAAGGGTACCGAGGACGCCAAGAAGAAGGGCGAAGCGCTCGAGACCTATTGCGTCAACCTCAACAAGAA
GGCGCGCGACGGCAAGATCGATCCGGTGATCGGACGCAATTCCGAGATCAACCGGGCGATCCAGGTGCTGTGCCGCCGGC
AGAAGAACAACCCGCTGTTCGTGGGCGAGGCCGGCGTCGGCAAGACCGCGATCGCGGAGGGCCTGGCCAAGCGCATCGTC
GACAGCGAGGTGCCGGAGGTCCTTGCGGCTGCGACCGTGTTCTCGCTCGACATGGGCACGCTGCTCGCAGGCACCCGCTA
TCGCGGCGACTTCGAGGAGCGCCTGAAGCAGGTGCTGAAGGAGCTCGAAGCGCATCCCAACGCCATCCTGTTCATCGACG
AGATCCACACCGTGATCGGTGCGGGCGCGACGTCCGGCGGGGCGATGGATGCGTCGAACCTGCTCAAGCCGGCGCTTGCC
TCGGGCACGATCCGCTGCATGGGCTCGACCACCTACAAGGAATACCGCCAGCACTTCGAGAAGGACCGCGCGCTGGTGCG
GCGCTTCCAGAAGATCGACATCAACGAGCCGACGGTCGAGGACGCGATCGCGATCCTCAAGGGTCTCAAGCCTTACTTCG
AGGACTACCATCGGCTGAAGTACACCAACGAGGCGATCGAGGCGGCGGTGCAGCTCTCCTCGCGCTACATCCATGACCGC
AAGCTGCCCGACAAGGCGATCGACGTGATCGACGAGTCAGGTGCGGCGCAGATGCTGGTGGCCGAGAACAAGCGCAAGAA
GACCATCGGCATCAAGGAGATCGAGACCACGATCGCGTCGATGGCGCGGATCCCGCCGAAGAGCGTGTCGAAGGACGATG
CCGAGGTGCTCAAGCATCTCGAGCAGACCCTGAAGCGCACCGTGTTCGGTCAGGACAAGGCGATCGAGTCGCTCGCCGCA
TCGATCAAGCTGGCGCGTGCCGGCCTGCGCGAGCCGGAGAAGCCGATCGGCTGCTATTTGTTCTCGGGTCCGACCGGCGT
CGGCAAGACCGAGGTGGCAAAGCAGCTCGCGGCGTCGCTCGGCGTCGAGCTGTTGCGCTTCGACATGTCCGAATACATGG
AGCGGCACACCGTGTCGCGCCTGATCGGCGCGCCTCCCGGCTATGTCGGCTTCGACCAGGGCGGTCTGCTCACTGACGGC
GTCGACCAGCATCCGCATTGCGTGGTTCTGCTCGACGAAATCGAGAAGGCGCATCCCGACCTCTACAACGTGCTGCTCCA
GATCATGGATCACGGCCGGCTCACCGACCACAACGGCAAGCAGGTCAACTTCCGCAACGTGATCCTGATCATGACCACAA
ACGCGGGTGCTTCGGATCTCGCCAAGCAGGCGTTCGGCTTCACGCGCTCGAAGCGGGAAGGCGACGACCACGAGGCGATC
AACCGGCAGTTCGCGCCGGAATTCCGCAACCGTCTCGATGCCATCGTCTCGTTCGGCCATCTCAGCGTCGAGGTGATCGG
TACGGTCGTGGAGAAGTTCGTGCTGCAGCTCGAGGCTCAGCTCGGCGATCGCGACGTCACCATCGAACTGTCCGAGCCCG
CCAAGACCTGGCTGGTCCAGCATGGTTACGACGAGCAGATGGGCGCACGGCCAATGGCCCGCGTCATCCAGGAGCACATC
AAGAAGCCGCTGGCCGACGAGGTGCTGTTCGGCAAGCTCAAGGGTGGCGGCCACGTTCGCGTCGTCCTGGTCAAGGACGA
GGCCGACGAGACCAAGGACAAGATCGGGTTCGAGTTCCTCGACGGTCCGATCACGCCGAAGCAGGAGAAGCTGCCCGGCG
CACGCAAGCGTCCGCCGGGCAAGTCCAAGCCGGGCGGTGGCGGCTCCGGCGGCTCGAAGGGGCCGACCTCGAAGGGCCCG
CTGGTCAAGGCTTGA

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (15-64)

• ATPase family associated with various cellular activities (AAA) (AAA) (219-331)

• AAA domain (Cdc48 subfamily) (AAA_2) (495-655)

• AAA lid domain (AAA_lid_9) (358-462)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (661-741)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	39.006	100	0.391
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	37.269	100	0.377
clpA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	40.267	93.284	0.376
clpC	Streptococcus pneumoniae D39	37.376	100	0.376
clpC	Streptococcus pneumoniae TIGR4	37.376	100	0.376
clpC	Streptococcus pneumoniae Rx1	37.376	100	0.376
clpC	Streptococcus thermophilus LMD-9	36.667	100	0.369
clpC	Streptococcus thermophilus LMG 18311	36.667	100	0.369