Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   PJ17_RS06120 Genome accession   NZ_CP010306
Coordinates   1188721..1189215 (+) Length   164 a.a.
NCBI ID   WP_002859279.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 00-1597     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1183721..1194215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJ17_RS06105 (PJ17_06105) - 1185107..1186285 (-) 1179 WP_002856548.1 metal-dependent hydrolase -
  PJ17_RS06110 (PJ17_06110) gpsA 1186295..1187191 (-) 897 WP_079263660.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  PJ17_RS06115 (PJ17_06115) gatB 1187188..1188606 (-) 1419 WP_002867377.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  PJ17_RS06120 (PJ17_06120) luxS 1188721..1189215 (+) 495 WP_002859279.1 S-ribosylhomocysteine lyase Regulator
  PJ17_RS06125 (PJ17_06125) - 1189527..1190519 (+) 993 WP_002868574.1 isopenicillin N synthase family oxygenase -
  PJ17_RS06130 (PJ17_06130) - 1190530..1191300 (+) 771 WP_002914255.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  PJ17_RS06135 (PJ17_06135) metE 1191312..1193576 (+) 2265 WP_002879807.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18212.25 Da        Isoelectric Point: 7.3250

>NTDB_id=119653 PJ17_RS06120 WP_002859279.1 1188721..1189215(+) (luxS) [Campylobacter jejuni subsp. jejuni strain 00-1597]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWKAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=119653 PJ17_RS06120 WP_002859279.1 1188721..1189215(+) (luxS) [Campylobacter jejuni subsp. jejuni strain 00-1597]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTATTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATCTTAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCAAAAGCTTGGAAAGCAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.671

98.171

0.713

Multiple sequence alignment