Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PJ17_RS05500 Genome accession   NZ_CP010306
Coordinates   1068454..1069002 (+) Length   182 a.a.
NCBI ID   WP_002869474.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 00-1597     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1063454..1074002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJ17_RS05465 (PJ17_05465) - 1063645..1064070 (+) 426 WP_002869469.1 GNAT family N-acetyltransferase -
  PJ17_RS05470 (PJ17_05470) - 1064134..1064753 (+) 620 Protein_1059 NAD(P)H-dependent oxidoreductase -
  PJ17_RS05475 (PJ17_05475) - 1064753..1065358 (+) 606 WP_002869471.1 NAD(P)H-dependent oxidoreductase -
  PJ17_RS05480 (PJ17_05480) pgsA 1065483..1066019 (+) 537 WP_002869472.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PJ17_RS05485 (PJ17_05485) rseP 1066016..1067122 (+) 1107 WP_002869473.1 RIP metalloprotease RseP -
  PJ17_RS05490 (PJ17_05490) - 1067115..1067981 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  PJ17_RS05495 (PJ17_05495) rpsF 1068068..1068445 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  PJ17_RS05500 (PJ17_05500) ssb 1068454..1069002 (+) 549 WP_002869474.1 single-stranded DNA-binding protein Machinery gene
  PJ17_RS05505 (PJ17_05505) rpsR 1069013..1069273 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  PJ17_RS05510 (PJ17_05510) lon 1069333..1071708 (-) 2376 WP_002852988.1 endopeptidase La -
  PJ17_RS05515 (PJ17_05515) - 1071725..1072372 (-) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  PJ17_RS05520 (PJ17_05520) fliW 1072533..1072922 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  PJ17_RS05525 (PJ17_05525) proC 1072922..1073653 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  PJ17_RS05530 (PJ17_05530) ctsT 1073650..1073952 (+) 303 WP_002875928.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20569.47 Da        Isoelectric Point: 5.0431

>NTDB_id=119646 PJ17_RS05500 WP_002869474.1 1068454..1069002(+) (ssb) [Campylobacter jejuni subsp. jejuni strain 00-1597]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQSPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=119646 PJ17_RS05500 WP_002869474.1 1068454..1069002(+) (ssb) [Campylobacter jejuni subsp. jejuni strain 00-1597]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAGAGAAACCAAAGCCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.068

96.703

0.368
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363