Detailed information NTG0119436

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: SALWKB2_RS08390
• Genome accession: NZ_CP007446
• Coordinates: 1853427..1854911 (-)
• Length: 494 a.a.
• NCBI ID: WP_080690460.1
• Uniprot ID: -
• Organism: Snodgrassella alvi wkB2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1848427..1859911

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SALWKB2_RS08375 (SALWKB2_1661)	amgK	1850543..1851547 (+)	1005	WP_025331226.1	N-acetylmuramate/N-acetylglucosamine kinase AmgK	-
SALWKB2_RS08380 (SALWKB2_1662)	-	1851618..1852595 (-)	978	WP_025331227.1	hypothetical protein	-
SALWKB2_RS08385 (SALWKB2_1663)	-	1852666..1853427 (-)	762	WP_025331228.1	class I SAM-dependent methyltransferase	-
SALWKB2_RS08390 (SALWKB2_1664)	pilR	1853427..1854911 (-)	1485	WP_080690460.1	sigma-54 dependent transcriptional regulator	Regulator
SALWKB2_RS08395 (SALWKB2_1665)	-	1854904..1856478 (-)	1575	WP_025331230.1	nitrogen regulation protein NR(II)	-
SALWKB2_RS08400 (SALWKB2_1666)	parC	1856485..1858803 (-)	2319	WP_025331231.1	DNA topoisomerase IV subunit A	-

Sequence

Protein

• Length: 494 a.a.
• Molecular weight: 55559.33 Da
• Isoelectric Point: 5.1258

>NTDB_id=119436 SALWKB2_RS08390 WP_080690460.1 1853427..1854911(-) (pilR) [Snodgrassella alvi wkB2]
MNNNNQMDLEKPVLIIDDEADIRDLMELTLIKMGLSVKTAAGVAEAKKALRTHAFSLVLTDMRMPDGSGLEIVDYITAHN
LDIPIAVITAYGNAAQAVQALKNGAFDYLQKPITLAQLRTLVKSVITINNTAETEIDNKMVTAFKQSENKQKNEDTSAMV
NEQQVRERLLGNSPLITEVRQLISKLAKSNVPVYIAGESGSGKEQAARSIHEQSERRDKAFVAVNCGAIPEALMESEFFG
YKKGSFTGAESDRAGFFQHADGGTLFLDEVADLPLSMQVKLLRAIQERAVRRIGEMEEKQVDVRIICATHKDLNALVESG
QFRQDLFYRLNVVSITMPPLRELRDDLPQLIRVLLQRILHDETMTLTPEAKKALLQYSYPGNFRELENILERAIALSKNH
IIEVDDLQIHSYQLDNPRTESAENAGSNLSADSNEEIEDYQFGKTQIQDYLDEIERKILEQALAQTRYNRTQAAKLLGIS
FRSMRYRMERLGIV

Nucleotide

• Length: 1485 bp

>NTDB_id=119436 SALWKB2_RS08390 WP_080690460.1 1853427..1854911(-) (pilR) [Snodgrassella alvi wkB2]
ATGAATAATAATAATCAGATGGACTTAGAAAAGCCGGTACTGATAATAGATGATGAAGCCGATATTCGTGATTTAATGGA
GTTAACCCTGATTAAAATGGGTTTGTCCGTAAAAACTGCCGCTGGCGTAGCTGAGGCAAAAAAGGCTTTACGTACGCATG
CTTTCTCCCTGGTGCTAACGGATATGCGTATGCCGGATGGCTCCGGGCTGGAGATTGTTGATTATATTACTGCCCATAAT
CTGGATATTCCGATTGCAGTTATTACCGCTTACGGAAATGCAGCGCAGGCTGTACAGGCACTGAAAAATGGTGCTTTCGA
TTACTTACAAAAACCCATTACTCTGGCGCAGCTGCGTACTCTGGTTAAATCTGTTATTACAATCAATAATACTGCCGAAA
CCGAAATAGATAATAAAATGGTAACCGCATTTAAACAGTCTGAAAATAAACAAAAAAATGAAGATACTTCCGCAATGGTT
AACGAACAGCAGGTACGTGAACGTTTACTGGGTAATTCTCCGTTAATAACAGAAGTACGTCAGTTGATCAGCAAGCTGGC
TAAAAGTAACGTGCCGGTATACATTGCCGGAGAATCAGGCAGTGGTAAAGAGCAGGCAGCGCGCAGTATTCATGAACAGT
CAGAACGCAGAGACAAGGCATTTGTTGCTGTAAATTGTGGTGCCATACCTGAAGCATTGATGGAAAGTGAGTTTTTTGGT
TATAAAAAAGGCAGTTTTACCGGAGCAGAATCAGATAGGGCTGGTTTTTTTCAGCATGCGGACGGCGGAACATTATTTCT
GGATGAAGTAGCTGATTTACCACTATCGATGCAGGTTAAATTATTGCGGGCCATTCAGGAACGTGCTGTACGCCGGATTG
GCGAAATGGAAGAAAAACAGGTTGATGTCCGTATTATCTGTGCAACCCATAAAGATTTAAATGCTCTGGTTGAATCAGGT
CAGTTTCGTCAGGACTTGTTTTATCGTTTGAATGTTGTATCTATTACCATGCCGCCATTACGTGAATTACGTGATGATTT
GCCGCAGTTAATTCGGGTTTTACTGCAACGAATTTTGCATGATGAAACCATGACATTAACACCGGAAGCAAAAAAAGCAC
TGTTGCAATACAGTTATCCCGGTAATTTCCGTGAATTGGAGAATATTCTGGAACGTGCTATTGCACTGTCGAAAAATCAT
ATTATTGAGGTAGATGATTTACAGATTCATAGCTATCAGCTGGATAATCCGCGTACTGAATCTGCAGAGAATGCCGGCAG
TAATCTATCCGCAGATAGTAATGAGGAAATTGAGGATTACCAGTTCGGAAAAACTCAGATACAGGATTATTTGGATGAAA
TAGAGAGAAAAATCCTGGAACAGGCTTTAGCGCAAACCCGATATAACCGAACACAGGCCGCCAAATTACTGGGTATCAGT
TTTCGTTCTATGCGTTACCGGATGGAACGGTTAGGGATTGTCTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (451-490)

• Response regulator receiver domain (Response_reg) (13-122)

• Sigma-54 interaction domain (Sigma54_activat) (170-335)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	51.134	98.178	0.502
pilR	Acinetobacter baumannii strain A118	41.889	98.583	0.413