Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   Q433_RS17905 Genome accession   NZ_CP007409
Coordinates   3452744..3453466 (-) Length   240 a.a.
NCBI ID   WP_038427947.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. OH 131.1 strain OH131.1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3447744..3458466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q433_RS17870 (Q433_19375) fliW 3447883..3448314 (-) 432 WP_029725990.1 flagellar assembly protein FliW -
  Q433_RS17875 (Q433_19380) yviE 3448335..3448910 (-) 576 WP_014481045.1 DUF6470 family protein -
  Q433_RS17880 (Q433_19385) flgL 3448957..3449853 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  Q433_RS17885 (Q433_19390) flgK 3449864..3451387 (-) 1524 WP_015714798.1 flagellar hook-associated protein FlgK -
  Q433_RS17890 (Q433_19395) flgN 3451406..3451888 (-) 483 WP_003227999.1 flagellar protein FlgN -
  Q433_RS17895 (Q433_19400) flgM 3451904..3452170 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  Q433_RS17900 (Q433_19405) yvyF 3452251..3452670 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  Q433_RS17905 (Q433_19410) comFC 3452744..3453466 (-) 723 WP_038427947.1 comF operon protein ComFC Machinery gene
  Q433_RS17910 (Q433_19415) comFB 3453430..3453726 (-) 297 WP_015483764.1 late competence protein ComFB -
  Q433_RS17915 (Q433_19420) comFA 3453786..3455177 (-) 1392 WP_038427948.1 ATP-dependent helicase ComFA Machinery gene
  Q433_RS17920 (Q433_19425) fakBA 3455283..3456128 (-) 846 WP_003244125.1 DegV family protein -
  Q433_RS17925 (Q433_19430) degU 3456226..3456915 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  Q433_RS17930 (Q433_19435) degS 3456998..3458155 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27424.72 Da        Isoelectric Point: 9.4911

>NTDB_id=119244 Q433_RS17905 WP_038427947.1 3452744..3453466(-) (comFC) [Bacillus subtilis subsp. subtilis str. OH 131.1 strain OH131.1]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKEALSRFKFRGDAEIINAFKSDFSSTFSKVYPDKQFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAAGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=119244 Q433_RS17905 WP_038427947.1 3452744..3453466(-) (comFC) [Bacillus subtilis subsp. subtilis str. OH 131.1 strain OH131.1]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCTCTTTTTTTATTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAGCGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCAGTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTATC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGCAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment