Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   Q433_RS17925 Genome accession   NZ_CP007409
Coordinates   3456226..3456915 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis subsp. subtilis str. OH 131.1 strain OH131.1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3451226..3461915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q433_RS17890 (Q433_19395) flgN 3451406..3451888 (-) 483 WP_003227999.1 flagellar protein FlgN -
  Q433_RS17895 (Q433_19400) flgM 3451904..3452170 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  Q433_RS17900 (Q433_19405) yvyF 3452251..3452670 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  Q433_RS17905 (Q433_19410) comFC 3452744..3453466 (-) 723 WP_038427947.1 comF operon protein ComFC Machinery gene
  Q433_RS17910 (Q433_19415) comFB 3453430..3453726 (-) 297 WP_015483764.1 late competence protein ComFB -
  Q433_RS17915 (Q433_19420) comFA 3453786..3455177 (-) 1392 WP_038427948.1 ATP-dependent helicase ComFA Machinery gene
  Q433_RS17920 (Q433_19425) fakBA 3455283..3456128 (-) 846 WP_003244125.1 DegV family protein -
  Q433_RS17925 (Q433_19430) degU 3456226..3456915 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  Q433_RS17930 (Q433_19435) degS 3456998..3458155 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  Q433_RS17935 (Q433_19440) yvyE 3458372..3459025 (+) 654 WP_003227979.1 YigZ family protein -
  Q433_RS17940 (Q433_19445) tagV 3459025..3460200 (+) 1176 WP_015251114.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  Q433_RS17945 (Q433_19450) tagO 3460273..3461349 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=119246 Q433_RS17925 WP_003219701.1 3456226..3456915(-) (degU) [Bacillus subtilis subsp. subtilis str. OH 131.1 strain OH131.1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=119246 Q433_RS17925 WP_003219701.1 3456226..3456915(-) (degU) [Bacillus subtilis subsp. subtilis str. OH 131.1 strain OH131.1]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment