Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   Q433_RS15975 Genome accession   NZ_CP007409
Coordinates   3065802..3066446 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. OH 131.1 strain OH131.1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3060802..3071446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q433_RS15940 (Q433_17295) mrpB 3061994..3062425 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  Q433_RS15945 (Q433_17300) mrpC 3062425..3062766 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  Q433_RS15950 (Q433_17305) mrpD 3062759..3064240 (+) 1482 WP_029725869.1 Na+/H+ antiporter subunit D -
  Q433_RS15955 (Q433_17310) mrpE 3064246..3064722 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  Q433_RS15960 (Q433_17315) mrpF 3064722..3065006 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  Q433_RS15965 (Q433_17320) mnhG 3064990..3065364 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  Q433_RS15970 (Q433_17325) yuxO 3065403..3065783 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  Q433_RS15975 (Q433_17330) comA 3065802..3066446 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  Q433_RS15980 (Q433_17335) comP 3066527..3068839 (-) 2313 WP_038427877.1 histidine kinase Regulator
  Q433_RS15985 (Q433_17340) comX 3068855..3069076 (-) 222 WP_014114983.1 competence pheromone ComX -
  Q433_RS15990 (Q433_17345) - 3069073..3069942 (-) 870 WP_015714626.1 polyprenyl synthetase family protein -
  Q433_RS15995 (Q433_17350) degQ 3070127..3070267 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  Q433_RS21680 - 3070489..3070614 (+) 126 WP_121549029.1 hypothetical protein -
  Q433_RS16000 (Q433_17360) - 3070729..3071097 (+) 369 WP_038427878.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=119239 Q433_RS15975 WP_003220716.1 3065802..3066446(-) (comA) [Bacillus subtilis subsp. subtilis str. OH 131.1 strain OH131.1]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=119239 Q433_RS15975 WP_003220716.1 3065802..3066446(-) (comA) [Bacillus subtilis subsp. subtilis str. OH 131.1 strain OH131.1]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTTAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment