Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AJ82_RS01840 Genome accession   NZ_CP007244
Coordinates   344364..344801 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis TrigoCor1448     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 339364..349801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AJ82_RS01815 (AJ82_01945) - 340384..341520 (+) 1137 WP_025284207.1 zinc-dependent alcohol dehydrogenase -
  AJ82_RS01820 (AJ82_01950) - 341535..341969 (+) 435 WP_012116767.1 RDD family protein -
  AJ82_RS01825 (AJ82_01955) - 342041..342364 (+) 324 WP_007409357.1 YckD family protein -
  AJ82_RS01830 (AJ82_01960) - 342468..343904 (+) 1437 WP_025284208.1 family 1 glycosylhydrolase -
  AJ82_RS01835 (AJ82_01965) nin/comJ 343945..344343 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  AJ82_RS01840 (AJ82_01970) nucA/comI 344364..344801 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AJ82_RS01845 (AJ82_01975) hxlB 345159..345716 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  AJ82_RS01850 (AJ82_01980) hxlA 345713..346348 (-) 636 WP_025284209.1 3-hexulose-6-phosphate synthase -
  AJ82_RS01855 (AJ82_01985) - 346580..346942 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=118199 AJ82_RS01840 WP_003156588.1 344364..344801(-) (nucA/comI) [Bacillus velezensis TrigoCor1448]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=118199 AJ82_RS01840 WP_003156588.1 344364..344801(-) (nucA/comI) [Bacillus velezensis TrigoCor1448]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACAAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment