Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   AJ82_RS01835 Genome accession   NZ_CP007244
Coordinates   343945..344343 (-) Length   132 a.a.
NCBI ID   WP_007609299.1    Uniprot ID   -
Organism   Bacillus velezensis TrigoCor1448     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 338945..349343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AJ82_RS01810 (AJ82_01940) - 339117..340319 (+) 1203 WP_025284206.1 GTP-binding protein -
  AJ82_RS01815 (AJ82_01945) - 340384..341520 (+) 1137 WP_025284207.1 zinc-dependent alcohol dehydrogenase -
  AJ82_RS01820 (AJ82_01950) - 341535..341969 (+) 435 WP_012116767.1 RDD family protein -
  AJ82_RS01825 (AJ82_01955) - 342041..342364 (+) 324 WP_007409357.1 YckD family protein -
  AJ82_RS01830 (AJ82_01960) - 342468..343904 (+) 1437 WP_025284208.1 family 1 glycosylhydrolase -
  AJ82_RS01835 (AJ82_01965) nin/comJ 343945..344343 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  AJ82_RS01840 (AJ82_01970) nucA/comI 344364..344801 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AJ82_RS01845 (AJ82_01975) hxlB 345159..345716 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  AJ82_RS01850 (AJ82_01980) hxlA 345713..346348 (-) 636 WP_025284209.1 3-hexulose-6-phosphate synthase -
  AJ82_RS01855 (AJ82_01985) - 346580..346942 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14977.03 Da        Isoelectric Point: 4.9712

>NTDB_id=118198 AJ82_RS01835 WP_007609299.1 343945..344343(-) (nin/comJ) [Bacillus velezensis TrigoCor1448]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=118198 AJ82_RS01835 WP_007609299.1 343945..344343(-) (nin/comJ) [Bacillus velezensis TrigoCor1448]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTCATATTCCAAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758

Multiple sequence alignment