Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   RG64_RS03275 Genome accession   NZ_CP010226
Coordinates   611825..612340 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain S1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 606825..617340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG64_RS03230 (RG64_02995) csrA 607546..607731 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  RG64_RS03260 (RG64_03025) yqaB 609055..609621 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  RG64_RS03265 (RG64_03030) yqaA 609618..610046 (+) 429 WP_001287454.1 YqaA family protein -
  RG64_RS03270 (RG64_03035) gshA 610119..611675 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  RG64_RS03275 (RG64_03040) luxS 611825..612340 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  RG64_RS03280 (RG64_03045) emrB 612404..613804 (-) 1401 Protein_592 multidrug efflux MFS transporter permease subunit EmrB -
  RG64_RS27555 (RG64_03050) - 613851..614126 (+) 276 WP_000179213.1 IS1-like element transposase -
  RG64_RS27560 - 614171..614534 (+) 364 Protein_594 IS1 family transposase -
  RG64_RS03305 (RG64_03055) - 614669..615640 (+) 972 WP_032174087.1 toprim domain-containing protein -
  RG64_RS03310 (RG64_03060) - 615637..616440 (+) 804 WP_032174088.1 antitermination protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=118183 RG64_RS03275 WP_001130211.1 611825..612340(+) (luxS) [Escherichia coli strain S1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=118183 RG64_RS03275 WP_001130211.1 611825..612340(+) (luxS) [Escherichia coli strain S1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment