Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   KHU1_RS04565 Genome accession   NZ_CP007242
Coordinates   913119..913310 (+) Length   63 a.a.
NCBI ID   WP_042635050.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens KHG19     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 908119..918310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHU1_RS04530 (KHU1_0865) argF 908971..909942 (+) 972 WP_032871181.1 ornithine carbamoyltransferase -
  KHU1_RS04535 (KHU1_0866) - 910018..910197 (+) 180 WP_003155070.1 YjzC family protein -
  KHU1_RS04540 (KHU1_0867) - 910234..910419 (-) 186 WP_007409129.1 YjzD family protein -
  KHU1_RS04550 (KHU1_0869) - 910680..911414 (+) 735 WP_007409127.1 hypothetical protein -
  KHU1_RS04555 (KHU1_0870) - 911497..912063 (+) 567 WP_007409126.1 hypothetical protein -
  KHU1_RS04560 (KHU1_0871) med 912153..913106 (+) 954 WP_007409125.1 BMP family ABC transporter substrate-binding protein Regulator
  KHU1_RS04565 (KHU1_0872) comZ 913119..913310 (+) 192 WP_042635050.1 ComZ family protein Regulator
  KHU1_RS04570 (KHU1_0873) - 913339..913557 (-) 219 WP_007409123.1 hypothetical protein -
  KHU1_RS04575 (KHU1_0874) - 913724..914662 (+) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  KHU1_RS04580 (KHU1_0875) fabF 914685..915923 (+) 1239 WP_020955629.1 beta-ketoacyl-ACP synthase II -
  KHU1_RS04585 (KHU1_0876) - 916006..916791 (+) 786 WP_042635051.1 DUF2268 domain-containing protein -
  KHU1_RS04590 (KHU1_0877) - 916965..917951 (+) 987 WP_007409119.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 7167.26 Da        Isoelectric Point: 4.2259

>NTDB_id=118126 KHU1_RS04565 WP_042635050.1 913119..913310(+) (comZ) [Bacillus amyloliquefaciens KHG19]
MQHEKSLEFMQIAMKYLPEAKAELEKSGIDLSLELIQPFMDLFTSVMAEAYELGRSDAGELNK

Nucleotide


Download         Length: 192 bp        

>NTDB_id=118126 KHU1_RS04565 WP_042635050.1 913119..913310(+) (comZ) [Bacillus amyloliquefaciens KHG19]
ATGCAGCATGAAAAGTCTCTTGAATTTATGCAGATCGCGATGAAATACCTGCCGGAAGCAAAGGCGGAGCTTGAGAAATC
CGGCATAGATCTGTCTTTGGAATTGATTCAGCCGTTTATGGACCTGTTTACATCGGTCATGGCGGAAGCGTATGAGCTTG
GCAGATCTGATGCCGGGGAGCTGAATAAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

84.483

92.063

0.778

Multiple sequence alignment