Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | RG61_RS21640 | Genome accession | NZ_CP010213 |
| Coordinates | 4145113..4145553 (+) | Length | 146 a.a. |
| NCBI ID | WP_000360902.1 | Uniprot ID | A7ZHJ7 |
| Organism | Escherichia coli strain M15 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 4140113..4150553
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG61_RS21615 (RG61_20435) | aroP | 4141111..4142484 (+) | 1374 | WP_000969915.1 | aromatic amino acid transporter AroP | - |
| RG61_RS21620 (RG61_20440) | ampE | 4142527..4143381 (-) | 855 | WP_000172000.1 | beta-lactamase regulator AmpE | - |
| RG61_RS21625 (RG61_20445) | ampD | 4143378..4143929 (-) | 552 | WP_000923721.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| RG61_RS21630 (RG61_20450) | nadC | 4144017..4144910 (+) | 894 | WP_001135174.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| RG61_RS21640 (RG61_20460) | pilA | 4145113..4145553 (+) | 441 | WP_000360902.1 | prepilin peptidase-dependent pilin | Machinery gene |
| RG61_RS21645 (RG61_20465) | pilB | 4145563..4146948 (+) | 1386 | WP_001025154.1 | type II secretion system protein GspE | Machinery gene |
| RG61_RS21650 (RG61_20470) | hofC | 4146938..4148140 (+) | 1203 | WP_000157238.1 | protein transport protein HofC | - |
| RG61_RS21655 (RG61_20475) | guaC | 4148175..4149218 (-) | 1044 | WP_001217338.1 | GMP reductase | - |
| RG61_RS29660 | - | 4149374..4149418 (-) | 45 | WP_120795372.1 | protein YacM | - |
| RG61_RS21660 (RG61_20480) | coaE | 4149443..4150063 (+) | 621 | WP_001269531.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 15630.76 Da Isoelectric Point: 4.5559
>NTDB_id=117982 RG61_RS21640 WP_000360902.1 4145113..4145553(+) (pilA) [Escherichia coli strain M15]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALHQACEDVFRFDDAN
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALHQACEDVFRFDDAN
Nucleotide
Download Length: 441 bp
>NTDB_id=117982 RG61_RS21640 WP_000360902.1 4145113..4145553(+) (pilA) [Escherichia coli strain M15]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACACGCAACTGCAATATTCAAAGTGACAGCGCATTGCATC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACACGCAACTGCAATATTCAAAGTGACAGCGCATTGCATC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
41.791 |
91.781 |
0.384 |
| pilA | Haemophilus influenzae Rd KW20 |
41.045 |
91.781 |
0.377 |