Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   BE73_RS04705 Genome accession   NZ_CP007221
Coordinates   1036524..1037975 (-) Length   483 a.a.
NCBI ID   WP_178385942.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzicola strain CFBP7342     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1031524..1042975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE73_RS04685 (BE73_05005) - 1031771..1032400 (+) 630 WP_024711608.1 hypothetical protein -
  BE73_RS04690 (BE73_05010) - 1032370..1033896 (+) 1527 WP_044749930.1 membrane protein -
  BE73_RS04695 (BE73_05015) pilB 1033931..1035664 (+) 1734 WP_024711610.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BE73_RS24345 (BE73_05020) - 1035674..1036183 (-) 510 WP_200891580.1 Fic family protein -
  BE73_RS24350 - 1036245..1036451 (-) 207 WP_082348324.1 YhfG family protein -
  BE73_RS04705 (BE73_05025) pilR 1036524..1037975 (-) 1452 WP_178385942.1 sigma-54 dependent transcriptional regulator Regulator
  BE73_RS04710 (BE73_05030) - 1038246..1039859 (-) 1614 WP_014504316.1 HAMP domain-containing sensor histidine kinase -
  BE73_RS04715 (BE73_05035) sucC 1040093..1041262 (+) 1170 WP_014504315.1 ADP-forming succinate--CoA ligase subunit beta -
  BE73_RS04720 (BE73_05040) sucD 1041287..1042162 (+) 876 WP_014504314.1 succinate--CoA ligase subunit alpha -
  BE73_RS24355 - 1042336..1042560 (+) 225 Protein_928 hypothetical protein -

Sequence

Protein


Download         Length: 483 a.a.        Molecular weight: 52497.23 Da        Isoelectric Point: 6.8291

>NTDB_id=117916 BE73_RS04705 WP_178385942.1 1036524..1037975(-) (pilR) [Xanthomonas oryzae pv. oryzicola strain CFBP7342]
MRRAPLDNCRPSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNHDRPAPPPPPEQASRL
LGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGA
HADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHRDLGELVSDGRFRHDLYYR
INVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATD
LRLPAHGGHRLAATPGNAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKL
GME

Nucleotide


Download         Length: 1452 bp        

>NTDB_id=117916 BE73_RS04705 WP_178385942.1 1036524..1037975(-) (pilR) [Xanthomonas oryzae pv. oryzicola strain CFBP7342]
TTGCGCCGCGCCCCGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGAGCCGTATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCCTGCCCGAC
GGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGTGGACATCGGCGTGCTGCGCG
GCTTGGTCAAGCACGCGCTGGAATTGAACAACCACGACCGCCCTGCTCCGCCGCCGCCACCTGAACAGGCCAGCCGCCTG
CTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGTCAGGCACCGGTCTACATCGT
CGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCGTGC
CGGTCAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCACCGGCGCG
CATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTTGCA
GATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTCCGGCGAAACCCTGGTGGACG
TACGCATCCTGTCGGCCACCCACAGGGACCTGGGCGAGCTGGTCTCCGACGGCCGTTTTCGACACGATCTGTACTACCGC
ATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAGCTGGCCGCTGCCATCATCGC
GCGCCTGGCGCACAGCCACGGCCGCCCCATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGGATCACTACGGCTTCC
CCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCCACCGAC
CTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAACGCCGCCGTGGAACCACGCGAAGCCGTCGT
CGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGCGATCCAGAAAGCGCTGGAAG
AAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGTATCACGTTTCGGGCGTTGCGTTACAAGTTGAAGAAGTTG
GGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(440-480)

Sigma-54 interaction domain (Sigma54_activat)

(161-326)

Response regulator receiver domain (Response_reg)

(28-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.203

95.652

0.605
  pilR Acinetobacter baumannii strain A118

48.701

95.652

0.466

Multiple sequence alignment