Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BE24_RS07650 Genome accession   NZ_CP007208
Coordinates   1572167..1572586 (-) Length   139 a.a.
NCBI ID   WP_029377976.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain HKUOPL8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1567167..1577586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE24_RS07625 (BE24_07930) thiE 1567678..1568316 (-) 639 WP_037557147.1 thiamine phosphate synthase -
  BE24_RS07630 (BE24_07935) thiM 1568319..1569107 (-) 789 WP_038678895.1 hydroxyethylthiazole kinase -
  BE24_RS07635 (BE24_07940) thiD 1569100..1569921 (-) 822 WP_029377973.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  BE24_RS07640 (BE24_07945) tenA 1569923..1570603 (-) 681 WP_038678897.1 thiaminase II -
  BE24_RS07645 (BE24_07950) - 1571045..1571740 (-) 696 WP_029377975.1 transglycosylase family protein -
  BE24_RS07650 (BE24_07955) ssb 1572167..1572586 (-) 420 WP_029377976.1 single-stranded DNA-binding protein Machinery gene
  BE24_RS07655 (BE24_07960) - 1572777..1573217 (+) 441 WP_017722099.1 YwpF-like family protein -
  BE24_RS07660 (BE24_07965) fabZ 1573267..1573704 (-) 438 WP_029377977.1 3-hydroxyacyl-ACP dehydratase FabZ -
  BE24_RS07665 (BE24_07970) murA 1573762..1575027 (-) 1266 WP_038678898.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  BE24_RS07670 (BE24_07975) - 1575134..1575367 (-) 234 WP_017722096.1 DUF1146 family protein -
  BE24_RS07675 (BE24_07980) - 1575707..1576111 (-) 405 WP_017722095.1 F0F1 ATP synthase subunit epsilon -
  BE24_RS07680 (BE24_07985) atpD 1576131..1577543 (-) 1413 WP_038678900.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16163.58 Da        Isoelectric Point: 6.4617

>NTDB_id=117769 BE24_RS07650 WP_029377976.1 1572167..1572586(-) (ssb) [Staphylococcus xylosus strain HKUOPL8]
MINNIVIVGRLTKDPKIYEKEGNKLATMCVAITRNYKDKDQNTICDYLYCKAVGKIANNIELYLNKGSLVGITGQMQSRK
YEKEGQMHFVSELFIETIRFMSPRSKDEVNEFHEIFPIEQVCNSNKEKNLQDNEIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=117769 BE24_RS07650 WP_029377976.1 1572167..1572586(-) (ssb) [Staphylococcus xylosus strain HKUOPL8]
ATGATTAACAACATTGTCATAGTAGGGAGATTAACCAAAGACCCTAAAATTTATGAAAAGGAGGGGAATAAATTAGCTAC
AATGTGTGTAGCGATAACAAGAAATTATAAAGATAAGGATCAAAATACTATTTGTGATTATCTCTATTGTAAGGCAGTTG
GTAAAATAGCTAATAATATCGAACTATATTTAAATAAAGGATCACTTGTGGGTATCACTGGTCAAATGCAATCACGAAAA
TATGAAAAAGAAGGGCAGATGCATTTTGTATCGGAACTTTTTATTGAAACGATTAGATTTATGTCTCCGAGAAGCAAAGA
TGAAGTTAATGAATTTCATGAAATATTCCCTATAGAGCAAGTTTGTAATTCTAATAAAGAAAAAAATTTACAAGATAATG
AAATATATGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

66.355

76.978

0.511
  ssb Staphylococcus aureus MW2

65.421

76.978

0.504

Multiple sequence alignment