Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   BD32_RS02965 Genome accession   NZ_CP007192
Coordinates   552083..552733 (-) Length   216 a.a.
NCBI ID   WP_002852117.1    Uniprot ID   Q0PAS3
Organism   Campylobacter jejuni strain NS4-5-1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 547083..557733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BD32_RS02930 (BD32_02925) - 547461..548465 (+) 1005 WP_002852264.1 membrane protein -
  BD32_RS02935 (BD32_02930) tlyA 548462..549223 (+) 762 WP_002852328.1 TlyA family RNA methyltransferase -
  BD32_RS02940 (BD32_02935) ribF 549189..550043 (+) 855 WP_002852206.1 bifunctional riboflavin kinase/FAD synthetase -
  BD32_RS02945 (BD32_02940) cmoA 550030..550740 (+) 711 WP_002859101.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  BD32_RS02950 (BD32_02945) - 550730..550951 (-) 222 WP_075867334.1 EexN family lipoprotein -
  BD32_RS02955 (BD32_02950) - 550948..551382 (-) 435 WP_002855128.1 EexN family lipoprotein -
  BD32_RS02960 (BD32_02955) - 551440..552072 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  BD32_RS02965 (BD32_02960) CJE0566 552083..552733 (-) 651 WP_002852117.1 DNA/RNA non-specific endonuclease Regulator
  BD32_RS02970 (BD32_02965) nth 552730..553356 (-) 627 WP_002852225.1 endonuclease III -
  BD32_RS02975 (BD32_02970) peb4 553437..554258 (+) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  BD32_RS02980 (BD32_02975) fbaA 554258..555322 (+) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  BD32_RS02985 (BD32_02980) - 555417..556859 (+) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25472.10 Da        Isoelectric Point: 9.6573

>NTDB_id=117336 BD32_RS02965 WP_002852117.1 552083..552733(-) (CJE0566) [Campylobacter jejuni strain NS4-5-1]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=117336 BD32_RS02965 WP_002852117.1 552083..552733(-) (CJE0566) [Campylobacter jejuni strain NS4-5-1]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0PAS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63

Multiple sequence alignment