Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BD28_RS03075 Genome accession   NZ_CP007189
Coordinates   594608..595381 (+) Length   257 a.a.
NCBI ID   WP_022552258.1    Uniprot ID   -
Organism   Campylobacter jejuni strain HF5-5-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 589608..600381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BD28_RS03060 (BD28_03055) - 590457..592391 (-) 1935 WP_004309024.1 ribonuclease R family protein -
  BD28_RS03065 (BD28_03060) ilvC 592510..593532 (+) 1023 WP_002921147.1 ketol-acid reductoisomerase -
  BD28_RS03070 (BD28_03065) - 593536..594618 (+) 1083 WP_002876692.1 divergent polysaccharide deacetylase family protein -
  BD28_RS03075 (BD28_03070) dprA 594608..595381 (+) 774 WP_022552258.1 DNA-processing protein DprA Machinery gene
  BD28_RS03080 (BD28_03075) ruvX 595378..595761 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  BD28_RS03085 (BD28_03080) - 595790..596629 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  BD28_RS03090 (BD28_03085) msrA 596805..597302 (-) 498 WP_002866497.1 peptide-methionine (S)-S-oxide reductase MsrA -
  BD28_RS03095 (BD28_03090) ppa 597343..597861 (-) 519 WP_002855031.1 inorganic diphosphatase -
  BD28_RS03100 (BD28_03095) adk 597871..598449 (-) 579 WP_002855137.1 adenylate kinase -
  BD28_RS03105 (BD28_03100) aspS 598446..600197 (-) 1752 WP_012006668.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28772.60 Da        Isoelectric Point: 7.6510

>NTDB_id=117256 BD28_RS03075 WP_022552258.1 594608..595381(+) (dprA) [Campylobacter jejuni strain HF5-5-1]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVITLSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTGTNLLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=117256 BD28_RS03075 WP_022552258.1 594608..595381(+) (dprA) [Campylobacter jejuni strain HF5-5-1]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATTGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCGGCTATGCCAAATACTATAGGTATTTTTGCTAATGGTTTGGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTACTTTAAGTAAGGCCGTTGTAGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGTACAGGGACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAATTGATTTGTGATTTCAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.833

100

0.988
  dprA Helicobacter pylori 26695

48.75

93.385

0.455

Multiple sequence alignment