Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   BD28_RS02890 Genome accession   NZ_CP007189
Coordinates   552742..553392 (-) Length   216 a.a.
NCBI ID   WP_002866466.1    Uniprot ID   A0AAN4A9Z1
Organism   Campylobacter jejuni strain HF5-5-1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 547742..558392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BD28_RS02855 (BD28_02850) - 548119..549123 (+) 1005 WP_012006666.1 hypothetical protein -
  BD28_RS02860 (BD28_02855) tlyA 549120..549881 (+) 762 WP_002866462.1 TlyA family RNA methyltransferase -
  BD28_RS02865 (BD28_02860) ribF 549847..550701 (+) 855 WP_002876662.1 bifunctional riboflavin kinase/FAD synthetase -
  BD28_RS02870 (BD28_02865) cmoA 550688..551398 (+) 711 WP_072238630.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  BD28_RS02875 (BD28_02870) - 551388..551609 (-) 222 WP_072238629.1 EexN family lipoprotein -
  BD28_RS02880 (BD28_02875) - 551600..552040 (-) 441 WP_002866465.1 EexN family lipoprotein -
  BD28_RS02885 (BD28_02880) - 552099..552731 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  BD28_RS02890 (BD28_02885) CJE0566 552742..553392 (-) 651 WP_002866466.1 DNA/RNA non-specific endonuclease Regulator
  BD28_RS02895 (BD28_02890) nth 553389..554015 (-) 627 WP_002866467.1 endonuclease III -
  BD28_RS02900 (BD28_02895) peb4 554096..554917 (+) 822 WP_002876664.1 peptidylprolyl isomerase PEB4 -
  BD28_RS02905 (BD28_02900) fbaA 554917..555981 (+) 1065 WP_002866470.1 class II fructose-bisphosphate aldolase -
  BD28_RS02910 (BD28_02905) - 556076..557518 (+) 1443 WP_052785387.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25450.22 Da        Isoelectric Point: 9.7361

>NTDB_id=117255 BD28_RS02890 WP_002866466.1 552742..553392(-) (CJE0566) [Campylobacter jejuni strain HF5-5-1]
MKIFIFLLAISLNIFALESYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQIAQINNKIWNEIEQRERNLAFKFQSIEVLN
LVLYDKEPLYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=117255 BD28_RS02890 WP_002866466.1 552742..553392(-) (CJE0566) [Campylobacter jejuni strain HF5-5-1]
ATGAAAATTTTCATCTTTTTACTCGCTATATCTCTTAATATTTTTGCCTTAGAATCTTACAAACCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCCGTTGCTTATAAAGTAGAAGCTTCAAATTTAAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCGCC
TAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGCAATATTACCCCACAAATTGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTCAAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACTATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.051

91.204

0.639
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63

Multiple sequence alignment