Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   RG52_RS12960 Genome accession   NZ_CP010177
Coordinates   2525021..2525758 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain H14     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2520021..2530758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG52_RS12930 (RG52_12330) yfiL 2520179..2520544 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  RG52_RS12935 (RG52_12335) aroF 2520754..2521824 (+) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  RG52_RS12940 (RG52_12340) tyrA 2521835..2522956 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  RG52_RS12945 (RG52_12345) pheA 2522999..2524159 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  RG52_RS25055 pheL 2524258..2524305 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  RG52_RS12950 (RG52_12350) raiA 2524409..2524750 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  RG52_RS12960 (RG52_12360) comL 2525021..2525758 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  RG52_RS12965 (RG52_12365) rluD 2525893..2526873 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RG52_RS12970 (RG52_12370) yfiH 2526870..2527601 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  RG52_RS12975 (RG52_12375) clpC 2527731..2530304 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=117249 RG52_RS12960 WP_000197686.1 2525021..2525758(-) (comL) [Escherichia coli strain H14]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=117249 RG52_RS12960 WP_000197686.1 2525021..2525758(-) (comL) [Escherichia coli strain H14]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment