Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   AD53_RS08345 Genome accession   NZ_CP007188
Coordinates   1551816..1552997 (-) Length   393 a.a.
NCBI ID   WP_002851165.1    Uniprot ID   Q7WYI5
Organism   Campylobacter jejuni strain HF5-4A-4     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1546816..1557997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AD53_RS08315 (AD53_08350) - 1547360..1547701 (+) 342 WP_002851191.1 hypothetical protein -
  AD53_RS08320 (AD53_08355) flgM 1547764..1547961 (+) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  AD53_RS08325 (AD53_08360) - 1548004..1548438 (+) 435 WP_002779263.1 flagellar protein FlgN -
  AD53_RS08330 (AD53_08365) flgK 1548448..1550274 (+) 1827 WP_002851396.1 flagellar hook-associated protein FlgK -
  AD53_RS08335 (AD53_08370) - 1550291..1551055 (+) 765 WP_002851318.1 TIGR02757 family protein -
  AD53_RS08340 (AD53_08375) - 1551059..1551823 (+) 765 WP_002851426.1 TSUP family transporter -
  AD53_RS08345 (AD53_08380) ctsF 1551816..1552997 (-) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  AD53_RS08350 (AD53_08385) ctsE 1552994..1554553 (-) 1560 WP_070308630.1 GspE/PulE family protein Machinery gene
  AD53_RS08355 (AD53_08390) ctsX 1554543..1555130 (-) 588 WP_002851370.1 membrane protein Machinery gene
  AD53_RS08360 (AD53_08395) ctsP 1555134..1555742 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  AD53_RS08365 (AD53_08400) ctsD 1555735..1557153 (-) 1419 WP_052834738.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AD53_RS08370 (AD53_08405) ctsR 1557125..1557442 (-) 318 WP_002851255.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45764.35 Da        Isoelectric Point: 9.0938

>NTDB_id=117243 AD53_RS08345 WP_002851165.1 1551816..1552997(-) (ctsF) [Campylobacter jejuni strain HF5-4A-4]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYFMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=117243 AD53_RS08345 WP_002851165.1 1551816..1552997(-) (ctsF) [Campylobacter jejuni strain HF5-4A-4]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATTTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTAATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WYI5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

99.235

99.746

0.99

Multiple sequence alignment