Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   AD53_RS08370 Genome accession   NZ_CP007188
Coordinates   1557125..1557442 (-) Length   105 a.a.
NCBI ID   WP_002851255.1    Uniprot ID   Q0P8E2
Organism   Campylobacter jejuni strain HF5-4A-4     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1552125..1562442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AD53_RS08350 (AD53_08385) ctsE 1552994..1554553 (-) 1560 WP_070308630.1 GspE/PulE family protein Machinery gene
  AD53_RS08355 (AD53_08390) ctsX 1554543..1555130 (-) 588 WP_002851370.1 membrane protein Machinery gene
  AD53_RS08360 (AD53_08395) ctsP 1555134..1555742 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  AD53_RS08365 (AD53_08400) ctsD 1555735..1557153 (-) 1419 WP_052834738.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AD53_RS08370 (AD53_08405) ctsR 1557125..1557442 (-) 318 WP_002851255.1 hypothetical protein Machinery gene
  AD53_RS08375 (AD53_08410) nifJ 1557466..1561026 (-) 3561 WP_052834737.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  AD53_RS08380 (AD53_08415) - 1561119..1561760 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 12702.64 Da        Isoelectric Point: 5.8722

>NTDB_id=117248 AD53_RS08370 WP_002851255.1 1557125..1557442(-) (ctsR) [Campylobacter jejuni strain HF5-4A-4]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKINININ

Nucleotide


Download         Length: 318 bp        

>NTDB_id=117248 AD53_RS08370 WP_002851255.1 1557125..1557442(-) (ctsR) [Campylobacter jejuni strain HF5-4A-4]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8E2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

98.095

0.981

Multiple sequence alignment