Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AD53_RS03695 Genome accession   NZ_CP007188
Coordinates   668402..669175 (+) Length   257 a.a.
NCBI ID   WP_002906182.1    Uniprot ID   -
Organism   Campylobacter jejuni strain HF5-4A-4     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 663402..674175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AD53_RS03680 (AD53_03670) - 664251..666185 (-) 1935 WP_010891871.1 ribonuclease R family protein -
  AD53_RS03685 (AD53_03675) ilvC 666304..667326 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  AD53_RS03690 (AD53_03680) - 667330..668412 (+) 1083 WP_002864866.1 divergent polysaccharide deacetylase family protein -
  AD53_RS03695 (AD53_03685) dprA 668402..669175 (+) 774 WP_002906182.1 DNA-processing protein DprA Machinery gene
  AD53_RS03700 (AD53_03690) ruvX 669172..669555 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX -
  AD53_RS03705 (AD53_03695) - 669584..670423 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  AD53_RS03710 (AD53_03700) msrA 670599..671096 (-) 498 WP_002858555.1 peptide-methionine (S)-S-oxide reductase MsrA -
  AD53_RS03715 (AD53_03705) ppa 671137..671655 (-) 519 WP_002852138.1 inorganic diphosphatase -
  AD53_RS03720 (AD53_03710) adk 671665..672243 (-) 579 WP_002858481.1 adenylate kinase -
  AD53_RS03725 (AD53_03715) aspS 672240..673991 (-) 1752 WP_052834757.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28828.67 Da        Isoelectric Point: 7.0853

>NTDB_id=117229 AD53_RS03695 WP_002906182.1 668402..669175(+) (dprA) [Campylobacter jejuni strain HF5-4A-4]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTATNLLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=117229 AD53_RS03695 WP_002906182.1 668402..669175(+) (dprA) [Campylobacter jejuni strain HF5-4A-4]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGCAACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAATTGATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.222

100

0.992
  dprA Helicobacter pylori 26695

48.75

93.385

0.455

Multiple sequence alignment