Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   YSQ_RS05990 Genome accession   NZ_CP007183
Coordinates   1172694..1173464 (-) Length   256 a.a.
NCBI ID   WP_002815152.1    Uniprot ID   -
Organism   Campylobacter coli RM1875     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1167694..1178464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSQ_RS05960 (YSQ_06105) aspS 1167830..1169581 (+) 1752 WP_002781656.1 aspartate--tRNA ligase -
  YSQ_RS05965 (YSQ_06110) - 1169578..1170153 (+) 576 WP_002781658.1 adenylate kinase -
  YSQ_RS05970 (YSQ_06115) ppa 1170163..1170681 (+) 519 WP_002776378.1 inorganic diphosphatase -
  YSQ_RS05975 (YSQ_06120) msrA 1170729..1171229 (+) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  YSQ_RS05980 (YSQ_06125) - 1171452..1172306 (-) 855 WP_370450124.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  YSQ_RS05985 (YSQ_06130) ruvX 1172317..1172697 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX -
  YSQ_RS05990 (YSQ_06135) dprA 1172694..1173464 (-) 771 WP_002815152.1 DNA-processing protein DprA Machinery gene
  YSQ_RS05995 (YSQ_06140) - 1173454..1174506 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  YSQ_RS06000 (YSQ_06145) ilvC 1174509..1175531 (-) 1023 WP_002806714.1 ketol-acid reductoisomerase -
  YSQ_RS06005 (YSQ_06150) - 1175654..1177588 (+) 1935 WP_002839008.1 RNB domain-containing ribonuclease -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28833.26 Da        Isoelectric Point: 5.0727

>NTDB_id=117216 YSQ_RS05990 WP_002815152.1 1172694..1173464(-) (dprA) [Campylobacter coli RM1875]
MQSELPSAYLELFKELKNLPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPSTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYGEKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=117216 YSQ_RS05990 WP_002815152.1 1172694..1173464(-) (dprA) [Campylobacter coli RM1875]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCTTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAGCACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATGGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTTTTTATAAGGGTTTTGGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.172

100

0.762
  dprA Helicobacter pylori 26695

47.5

93.75

0.445

Multiple sequence alignment