Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   YSQ_RS02545 Genome accession   NZ_CP007183
Coordinates   514793..515443 (-) Length   216 a.a.
NCBI ID   WP_002780169.1    Uniprot ID   A0A0Q2GP61
Organism   Campylobacter coli RM1875     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 509793..520443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSQ_RS02515 (YSQ_02540) - 510587..511591 (+) 1005 WP_002780159.1 hypothetical protein -
  YSQ_RS02520 (YSQ_02545) - 511588..512337 (+) 750 WP_002777566.1 TlyA family RNA methyltransferase -
  YSQ_RS02525 - 512306..513142 (+) 837 WP_002819016.1 bifunctional riboflavin kinase/FAD synthetase -
  YSQ_RS02530 (YSQ_02555) cmoA 513146..513850 (+) 705 WP_002780163.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  YSQ_RS02535 (YSQ_02560) - 513854..514072 (-) 219 WP_002780165.1 EexN family lipoprotein -
  YSQ_RS02540 (YSQ_02565) - 514151..514783 (-) 633 WP_002780167.1 trimeric intracellular cation channel family protein -
  YSQ_RS02545 (YSQ_02570) CJE1441 514793..515443 (-) 651 WP_002780169.1 DNA/RNA non-specific endonuclease Regulator
  YSQ_RS02550 (YSQ_02575) nth 515440..516066 (-) 627 WP_002777553.1 endonuclease III -
  YSQ_RS02555 (YSQ_02580) - 516149..516970 (+) 822 WP_002777551.1 peptidylprolyl isomerase -
  YSQ_RS02560 (YSQ_02585) fbaA 516970..518034 (+) 1065 WP_002793415.1 class II fructose-bisphosphate aldolase -
  YSQ_RS02565 (YSQ_02590) - 518133..519587 (+) 1455 WP_002780172.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25080.76 Da        Isoelectric Point: 9.7703

>NTDB_id=117207 YSQ_RS02545 WP_002780169.1 514793..515443(-) (CJE1441) [Campylobacter coli RM1875]
MKLIIFLLAFTLHVFALEAYKPDKDFAPYFNPLNCSVVLDKFFYTNCYDYKLKGTKAVAYKVEASNLKEKQIKKRARFED
DTNIPKKYRSTWSDYKNSGYTRGHIASNASFRFSKAAQTSVFLMSNITPQNAQVNATVWNEIEQRERSLAFKFQSVEVLN
LILYGKNPKFIKNGIAIPSSYVKIIKTSRFEECYEVPNNNIQSEEINDYKISCNKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=117207 YSQ_RS02545 WP_002780169.1 514793..515443(-) (CJE1441) [Campylobacter coli RM1875]
ATGAAACTTATCATCTTTTTATTAGCATTTACACTTCATGTTTTTGCTTTAGAAGCTTATAAGCCCGATAAAGATTTTGC
GCCTTATTTTAATCCTTTAAATTGCTCTGTTGTTTTGGATAAATTTTTTTATACCAATTGTTATGATTATAAACTCAAAG
GCACTAAAGCCGTAGCCTATAAAGTCGAAGCGTCCAATCTAAAAGAAAAACAGATCAAAAAACGAGCTCGCTTTGAAGAT
GACACAAATATCCCTAAAAAATACCGCAGTACTTGGAGTGATTATAAAAATAGTGGTTATACCCGAGGACATATAGCCTC
AAATGCTTCTTTTCGCTTTAGTAAAGCAGCACAAACATCGGTTTTTTTGATGAGTAATATCACTCCACAAAATGCACAAG
TTAATGCAACGGTTTGGAATGAAATCGAACAAAGAGAAAGAAGTCTTGCTTTTAAATTCCAAAGCGTTGAAGTGCTAAAT
CTAATACTTTATGGTAAAAATCCTAAATTTATTAAAAATGGCATTGCTATACCGAGTTCTTATGTTAAGATTATCAAAAC
TTCTCGGTTTGAAGAATGTTATGAAGTACCCAATAACAATATCCAGAGCGAAGAAATCAATGATTATAAAATTTCTTGCA
ATAAATTCTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(35-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2GP61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

66.497

91.204

0.606
  CJE0566 Campylobacter jejuni RM1221

65.99

91.204

0.602

Multiple sequence alignment