Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   YSS_RS02870 Genome accession   NZ_CP007181
Coordinates   569994..570764 (+) Length   256 a.a.
NCBI ID   WP_002776372.1    Uniprot ID   A0A3H9IIK0
Organism   Campylobacter coli RM4661     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 564994..575764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSS_RS02855 (YSS_02890) - 565887..567821 (-) 1935 WP_025398808.1 ribonuclease R family protein -
  YSS_RS02860 (YSS_02895) ilvC 567944..568966 (+) 1023 WP_025398809.1 ketol-acid reductoisomerase -
  YSS_RS02865 (YSS_02900) - 568970..570004 (+) 1035 WP_025398810.1 divergent polysaccharide deacetylase family protein -
  YSS_RS02870 (YSS_02905) dprA 569994..570764 (+) 771 WP_002776372.1 DNA-processing protein DprA Machinery gene
  YSS_RS02875 (YSS_02910) ruvX 570761..571141 (+) 381 WP_002776373.1 Holliday junction resolvase RuvX -
  YSS_RS02880 (YSS_02915) - 571131..572006 (+) 876 WP_025398811.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  YSS_RS02885 (YSS_02920) msrA 572229..572729 (-) 501 WP_002806713.1 peptide-methionine (S)-S-oxide reductase MsrA -
  YSS_RS02890 (YSS_02925) ppa 572777..573295 (-) 519 WP_002776378.1 inorganic diphosphatase -
  YSS_RS02895 (YSS_02930) - 573306..573881 (-) 576 WP_002781658.1 adenylate kinase -
  YSS_RS02900 (YSS_02935) aspS 573878..575629 (-) 1752 WP_002825344.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28943.38 Da        Isoelectric Point: 5.2618

>NTDB_id=117176 YSS_RS02870 WP_002776372.1 569994..570764(+) (dprA) [Campylobacter coli RM4661]
MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPNTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYREKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=117176 YSS_RS02870 WP_002776372.1 569994..570764(+) (dprA) [Campylobacter coli RM4661]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAACACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGTGTGAGTGTGGATGAAGCAACTCAAATTTATAGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTTTTTATAAGGGTTTTGGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3H9IIK0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.562

100

0.766
  dprA Helicobacter pylori 26695

47.5

93.75

0.445

Multiple sequence alignment