Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DYB47_RS07070 Genome accession   NZ_UHFV01000002
Coordinates   1408734..1410536 (-) Length   600 a.a.
NCBI ID   WP_003081223.1    Uniprot ID   G5JUT7
Organism   Streptococcus macacae NCTC 11558     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1403734..1415536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYB47_RS07050 (NCTC11558_01429) - 1405505..1405999 (-) 495 WP_003079006.1 LURP-one-related/scramblase family protein -
  DYB47_RS07055 (NCTC11558_01431) - 1406246..1407265 (-) 1020 WP_003081365.1 peptidyl-prolyl cis-trans isomerase -
  DYB47_RS07060 (NCTC11558_01432) - 1407328..1408035 (-) 708 WP_040841575.1 O-methyltransferase -
  DYB47_RS07065 (NCTC11558_01433) - 1408097..1408714 (-) 618 WP_003080942.1 HAD-IA family hydrolase -
  DYB47_RS07070 (NCTC11558_01434) pepF 1408734..1410536 (-) 1803 WP_003081223.1 oligoendopeptidase F Regulator
  DYB47_RS07075 (NCTC11558_01435) - 1410547..1411497 (-) 951 WP_003079228.1 competence protein CoiA -
  DYB47_RS07080 (NCTC11558_01436) - 1411801..1412694 (-) 894 WP_003080591.1 alpha/beta hydrolase -
  DYB47_RS07085 (NCTC11558_01437) - 1412733..1413083 (-) 351 WP_003078802.1 nuclear transport factor 2 family protein -
  DYB47_RS07090 (NCTC11558_01438) - 1413194..1413496 (+) 303 WP_003080052.1 ArsR/SmtB family transcription factor -
  DYB47_RS07095 (NCTC11558_01439) - 1413506..1414474 (-) 969 WP_003081111.1 alcohol dehydrogenase catalytic domain-containing protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69609.13 Da        Isoelectric Point: 4.6823

>NTDB_id=1171327 DYB47_RS07070 WP_003081223.1 1408734..1410536(-) (pepF) [Streptococcus macacae NCTC 11558]
MSDNRSHIEEKYQWDLTTVFPSDKAWEKEEKSLIDDLEAAKGKSGHLLDSSQSLLEITELYLALSRRLEKLYVYASMRND
QDTTVSYYQELQARATALAAKFNQAFAFYEPEFMLLSKENYQDFLTECPDLLPYQHFFEKLFKQKEHVLSQKEEALLAEA
SEIFGAASETFEILDNADIVFPWVSDEMGEKVELSHGNFISLMESKNRDVRKEAYEAMYSIYEQYQHTYAKTLQTNVKAN
NFQAKIRNYGSAREAALAANFIPEAVYDLLIEAVNKHLPLLQRYVKLRQKILGLDELKMYDLYTPLSEADMSFTYEAALK
KAEEVLAVFGTAYAERVHRAFRERWIDVQVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLKEVTDDRQRFAILNHYLDDFKGTVFRQTQFAEFEDRIYKADQAGQVLTSDY
LNNLYADLNEKYYGLSKEDNPKIQYEWARIPHFYYNFYVYQYATGFAAANFLAQKIVHGAQEDKDKYLDYLKAGNSDYPL
NVIAKAGLDMTDSVYLDQAFKVFEERLIELEKLVEKGIVQ

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1171327 DYB47_RS07070 WP_003081223.1 1408734..1410536(-) (pepF) [Streptococcus macacae NCTC 11558]
ATGTCTGATAACCGCAGTCATATTGAAGAAAAATACCAGTGGGATTTAACCACCGTTTTTCCTAGCGATAAAGCCTGGGA
AAAGGAAGAAAAAAGTCTTATTGATGACTTAGAAGCAGCCAAGGGCAAGTCAGGACATTTATTGGATTCCAGTCAAAGTT
TGTTAGAGATTACAGAACTTTATTTGGCTCTTAGCCGTCGTTTGGAAAAGCTTTATGTTTATGCTTCTATGAGGAATGAC
CAAGACACAACGGTCAGTTACTATCAGGAATTGCAAGCAAGAGCAACAGCTTTGGCAGCTAAATTTAATCAAGCTTTTGC
TTTTTATGAACCTGAATTTATGCTTTTATCTAAAGAAAACTATCAGGATTTTTTGACAGAATGCCCAGACTTGCTGCCTT
ATCAGCATTTCTTTGAAAAATTATTCAAACAAAAGGAGCATGTCCTTTCTCAAAAGGAAGAAGCGCTTTTGGCAGAAGCC
AGTGAAATTTTTGGAGCTGCCAGTGAAACCTTTGAAATTCTTGATAATGCTGATATTGTTTTTCCTTGGGTCAGCGATGA
GATGGGAGAAAAAGTTGAATTGTCTCATGGTAACTTTATCAGCTTGATGGAGTCTAAGAACCGTGATGTTCGGAAAGAAG
CTTATGAGGCTATGTACAGCATTTATGAGCAGTATCAGCATACTTATGCTAAAACACTGCAAACCAATGTTAAGGCCAAT
AATTTTCAGGCAAAAATCAGGAATTATGGCAGTGCCCGTGAAGCAGCCCTGGCAGCCAATTTCATTCCAGAAGCTGTCTA
TGATCTCTTAATCGAAGCGGTTAATAAACACTTGCCCTTGCTGCAGCGTTATGTCAAACTGCGGCAAAAGATTTTAGGAC
TCGATGAGCTTAAGATGTACGATCTTTATACACCGCTATCCGAAGCAGATATGAGCTTTACCTATGAAGCTGCTTTGAAA
AAAGCTGAAGAAGTATTAGCTGTTTTTGGTACAGCTTATGCTGAGCGTGTGCACCGTGCTTTTAGAGAACGTTGGATTGA
TGTGCAGGTTAATAAGGGTAAGCGTTCGGGTGCTTATTCGGGCGGCTCTTATGACACGAATGCCTTTATGCTGCTTAATT
GGCAGGATACCTTGGATAATCTCTTTACTCTTGTTCATGAAACAGGGCACTCTTTGCATTCTACCTTTACACGTGAAAAT
CAGCCTTATGTTTATGGTGATTATTCTATTTTTCTAGCCGAGATTGCCTCAACAACCAATGAAAATATTTTAACAGAGAC
CTTGCTTAAAGAAGTAACAGATGATAGGCAGCGTTTTGCTATTCTTAATCATTATCTTGATGATTTCAAAGGAACGGTTT
TTCGCCAAACTCAATTTGCTGAATTTGAAGACCGCATTTATAAGGCTGATCAAGCAGGCCAAGTTCTCACTAGTGACTAT
CTCAATAATCTTTATGCAGATCTCAATGAAAAATACTATGGTTTAAGCAAGGAAGATAATCCCAAAATTCAATATGAATG
GGCTAGAATCCCGCATTTTTATTACAATTTTTATGTTTACCAGTATGCTACAGGCTTTGCTGCAGCTAATTTCTTAGCTC
AAAAAATAGTGCACGGCGCTCAAGAAGATAAGGATAAGTACCTTGACTATCTCAAGGCAGGTAATTCAGATTATCCTCTC
AATGTAATTGCTAAAGCAGGTCTTGATATGACGGATTCAGTCTATCTGGATCAAGCCTTTAAAGTTTTTGAAGAACGGTT
AATAGAGCTGGAAAAATTAGTCGAAAAAGGGATTGTTCAATGA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-580)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5JUT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

70.401

99.667

0.702

Multiple sequence alignment