Detailed information NTG1171245

Bioinformatically predicted

Overview

• Name: epdK
• Type: Machinery gene
• Locus tag: ACO05H_RS08655
• Genome accession: NZ_OZ245786
• Coordinates: 1541330..1542340 (+)
• Length: 336 a.a.
• NCBI ID: WP_421908090.1
• Uniprot ID: -
• Organism: MAG: Methanolacinia petrolearia isolate 5553be1b-f3aa-477c-a50a-baba7c0638a1
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1536330..1547340

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACO05H_RS08630	-	1536942..1537097 (+)	156	WP_421908086.1	hypothetical protein	-
ACO05H_RS08635	-	1537274..1537567 (+)	294	WP_421908087.1	hypothetical protein	-
ACO05H_RS08640	-	1537591..1537935 (+)	345	WP_421908088.1	hypothetical protein	-
ACO05H_RS08645	-	1538450..1540418 (+)	1969	Protein_1695	type II/IV secretion system ATPase subunit	-
ACO05H_RS08650	epdJ	1540405..1541328 (+)	924	WP_421908089.1	type II secretion system F family protein	Machinery gene
ACO05H_RS08655	epdK	1541330..1542340 (+)	1011	WP_421908090.1	type II secretion system F family protein	Machinery gene
ACO05H_RS08660	yciH	1542411..1542716 (-)	306	WP_013329751.1	stress response translation initiation inhibitor YciH	-
ACO05H_RS08665	-	1542924..1544276 (+)	1353	WP_421908091.1	cobyric acid synthase	-
ACO05H_RS08670	-	1544449..1544790 (+)	342	WP_421908092.1	hypothetical protein	-
ACO05H_RS08675	-	1544783..1545061 (-)	279	WP_421908093.1	hypothetical protein	-
ACO05H_RS08680	-	1545042..1545530 (-)	489	WP_421908094.1	YkgJ family cysteine cluster protein	-
ACO05H_RS08685	-	1545901..1547079 (+)	1179	WP_421908095.1	sugar phosphate nucleotidyltransferase	-

Sequence

Protein

• Length: 336 a.a.
• Molecular weight: 37158.26 Da
• Isoelectric Point: 5.2260

>NTDB_id=1171245 ACO05H_RS08655 WP_421908090.1 1541330..1542340(+) (epdK) [MAG: Methanolacinia petrolearia isolate 5553be1b-f3aa-477c-a50a-baba7c0638a1]
MGLFGKKKTEDAIPGEKDLEQIEIFEKIDSKRKRREGFNRILEDPVKVLTEKPENILIVSAPIALLFFVFGFISVISNYG
IYSLLNSTLIDDIFVITILIMLIPLAFLDTKESMRTRNIEVALPNFFRDVAGMNESGMTLPNAIHTVSDGDYGTLTPYIK
KLDNEVSWNIPFVNAIHRFGERLGTPLAKRSVDLIAKASQAGGDVSEVLRAAANDSYEFVSLATERRNNMLIYIVIVLVS
FLVFLLVIAIMTSTFLDTMAEAGAAVASSGTDTSGLSFGGAIDMDFYRRLFSHAAMIQAFFSGLVAGQMGEGRAIAGLKY
SLNMLIIAWISFRFFI

Nucleotide

• Length: 1011 bp

>NTDB_id=1171245 ACO05H_RS08655 WP_421908090.1 1541330..1542340(+) (epdK) [MAG: Methanolacinia petrolearia isolate 5553be1b-f3aa-477c-a50a-baba7c0638a1]
ATGGGACTATTTGGGAAGAAAAAAACAGAAGATGCCATCCCCGGGGAGAAAGACCTGGAACAGATCGAGATATTCGAGAA
GATCGATTCAAAGAGGAAACGAAGGGAAGGGTTCAACAGAATTCTTGAAGATCCAGTAAAAGTACTGACTGAAAAACCTG
AAAATATCCTTATTGTCTCCGCACCGATAGCGCTGCTGTTCTTCGTCTTTGGGTTTATATCGGTCATATCGAACTACGGA
ATATACTCCCTGCTGAATTCGACGTTAATTGACGATATCTTCGTGATCACAATCCTTATAATGCTCATACCCCTTGCATT
TCTCGATACCAAAGAATCGATGAGGACACGAAATATCGAGGTTGCGCTGCCGAATTTCTTCAGGGATGTCGCAGGGATGA
ACGAGAGCGGAATGACGCTTCCAAATGCCATCCACACCGTTTCGGACGGAGACTACGGAACCCTTACCCCGTATATAAAA
AAGCTCGACAACGAAGTCTCGTGGAATATTCCGTTTGTAAACGCCATACACAGGTTCGGCGAAAGGCTGGGGACTCCGCT
CGCGAAAAGAAGCGTTGATCTTATCGCAAAGGCAAGCCAGGCCGGCGGAGATGTAAGCGAGGTGCTAAGAGCGGCTGCAA
ACGATTCATACGAATTCGTCAGTCTTGCAACCGAAAGGCGGAACAATATGCTGATCTATATCGTTATAGTTCTTGTATCG
TTTCTTGTCTTCCTTCTGGTAATTGCAATTATGACGAGTACGTTCCTCGACACCATGGCCGAAGCAGGAGCAGCAGTTGC
ATCCTCGGGAACCGACACCTCCGGACTCTCCTTCGGTGGAGCCATAGATATGGACTTCTACAGGAGGCTGTTCTCCCATG
CTGCAATGATCCAGGCTTTTTTCTCCGGACTTGTAGCAGGTCAGATGGGTGAAGGAAGGGCAATAGCCGGCCTTAAATAT
TCTTTGAATATGCTGATAATCGCGTGGATTTCGTTTAGATTCTTCATCTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (126-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
epdK	Methanoculleus thermophilus strain DSM 2373	60.703	93.155	0.565