Detailed information NTG1171244

Bioinformatically predicted

Overview

• Name: epdJ
• Type: Machinery gene
• Locus tag: ACO05H_RS08650
• Genome accession: NZ_OZ245786
• Coordinates: 1540405..1541328 (+)
• Length: 307 a.a.
• NCBI ID: WP_421908089.1
• Uniprot ID: -
• Organism: MAG: Methanolacinia petrolearia isolate 5553be1b-f3aa-477c-a50a-baba7c0638a1
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1535405..1546328

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACO05H_RS08625	-	1535785..1536777 (-)	993	WP_421908085.1	A24 family peptidase C-terminal domain-containing protein	-
ACO05H_RS08630	-	1536942..1537097 (+)	156	WP_421908086.1	hypothetical protein	-
ACO05H_RS08635	-	1537274..1537567 (+)	294	WP_421908087.1	hypothetical protein	-
ACO05H_RS08640	-	1537591..1537935 (+)	345	WP_421908088.1	hypothetical protein	-
ACO05H_RS08645	-	1538450..1540418 (+)	1969	Protein_1695	type II/IV secretion system ATPase subunit	-
ACO05H_RS08650	epdJ	1540405..1541328 (+)	924	WP_421908089.1	type II secretion system F family protein	Machinery gene
ACO05H_RS08655	epdK	1541330..1542340 (+)	1011	WP_421908090.1	type II secretion system F family protein	Machinery gene
ACO05H_RS08660	yciH	1542411..1542716 (-)	306	WP_013329751.1	stress response translation initiation inhibitor YciH	-
ACO05H_RS08665	-	1542924..1544276 (+)	1353	WP_421908091.1	cobyric acid synthase	-
ACO05H_RS08670	-	1544449..1544790 (+)	342	WP_421908092.1	hypothetical protein	-
ACO05H_RS08675	-	1544783..1545061 (-)	279	WP_421908093.1	hypothetical protein	-
ACO05H_RS08680	-	1545042..1545530 (-)	489	WP_421908094.1	YkgJ family cysteine cluster protein	-

Sequence

Protein

• Length: 307 a.a.
• Molecular weight: 34586.40 Da
• Isoelectric Point: 9.1232

>NTDB_id=1171244 ACO05H_RS08650 WP_421908089.1 1540405..1541328(+) (epdJ) [MAG: Methanolacinia petrolearia isolate 5553be1b-f3aa-477c-a50a-baba7c0638a1]
MNSYERFCFSIFGKRAKRKREDYLTLRNDMIRARMKTPYEAYISTAYFSSIIAGLMAAILFSLITYLLRVPEIFVYKGNV
PDIFIEISKYSLILGTVFVLIVSLAVVGGLTYSIFHIYPTILAGDRRRNIYSTVPYAINYITAMSTAGITPAEVFRLLGN
SEIYGESAVEARYITREIDVFGKDLLDALRLAGQYTPSDRMRDFLQGAIASISSGSNLTEYFRNKSEQYMKENRQTQKTF
LNTLGLISESYVTALVAGTLFLIILQSIMSTISSTSSPMFLYVVIYGIIPLGSIMFVILIDAMTPEM

Nucleotide

• Length: 924 bp

>NTDB_id=1171244 ACO05H_RS08650 WP_421908089.1 1540405..1541328(+) (epdJ) [MAG: Methanolacinia petrolearia isolate 5553be1b-f3aa-477c-a50a-baba7c0638a1]
ATGAACAGTTATGAGAGATTTTGCTTCTCGATATTCGGAAAAAGAGCGAAAAGGAAGAGAGAAGACTATCTCACCCTGAG
AAACGATATGATCAGGGCCAGGATGAAAACTCCATATGAGGCCTATATTTCAACCGCCTACTTCTCATCGATCATTGCAG
GATTGATGGCTGCAATCCTCTTCTCGCTGATTACATACCTGCTGAGGGTTCCCGAGATTTTCGTGTATAAAGGAAATGTC
CCGGATATTTTTATTGAAATAAGCAAATACAGCCTGATTTTAGGCACCGTGTTCGTTCTGATTGTATCGCTGGCTGTAGT
CGGCGGACTGACATATTCGATCTTTCATATATACCCCACCATCCTTGCCGGCGACCGAAGGAGAAACATCTACTCCACAG
TTCCGTACGCCATAAATTACATTACCGCCATGTCGACGGCAGGCATTACGCCTGCAGAAGTATTCAGGCTTCTCGGCAAT
AGTGAAATCTATGGCGAAAGTGCAGTTGAGGCCAGGTACATCACGAGAGAGATCGACGTCTTCGGAAAGGACCTGCTGGA
CGCCCTGAGACTGGCAGGCCAGTACACACCCAGCGACAGAATGAGGGACTTCCTCCAGGGTGCAATTGCAAGCATATCAA
GCGGAAGCAATCTCACGGAATATTTCAGGAATAAATCGGAGCAGTACATGAAGGAGAACAGGCAGACGCAAAAGACCTTC
CTTAATACTCTCGGACTTATCTCCGAATCGTATGTAACCGCCCTTGTCGCAGGAACACTTTTCCTGATTATCCTGCAGTC
TATAATGTCGACTATCAGCAGTACTTCGAGCCCCATGTTTTTGTACGTCGTAATATACGGGATAATTCCGCTGGGGAGTA
TAATGTTCGTGATCTTAATTGATGCAATGACTCCGGAGATGTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (138-265)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
epdJ	Methanoculleus thermophilus strain DSM 2373	66.45	100	0.665