Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACOOFE_RS13790 Genome accession   NZ_OZ244138
Coordinates   2924399..2924956 (-) Length   185 a.a.
NCBI ID   WP_420415454.1    Uniprot ID   -
Organism   MAG: Roseibium sp. isolate 0362df45-af4a-42fd-816a-13a51ea0af63     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2919399..2929956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOOFE_RS13775 - 2919464..2920315 (-) 852 WP_420415451.1 PaaX family transcriptional regulator C-terminal domain-containing protein -
  ACOOFE_RS13780 - 2920495..2921760 (+) 1266 WP_420415452.1 zinc ABC transporter substrate-binding protein -
  ACOOFE_RS13785 - 2922088..2924061 (-) 1974 WP_420415453.1 L,D-transpeptidase family protein -
  ACOOFE_RS13790 ssb 2924399..2924956 (-) 558 WP_420415454.1 single-stranded DNA-binding protein Machinery gene
  ACOOFE_RS13795 uvrA 2925416..2928343 (+) 2928 WP_420415455.1 excinuclease ABC subunit UvrA -
  ACOOFE_RS13800 - 2928579..2928731 (+) 153 WP_141186862.1 DUF1127 domain-containing protein -
  ACOOFE_RS13805 - 2929444..2929590 (+) 147 WP_247653682.1 DUF1127 domain-containing protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 18973.64 Da        Isoelectric Point: 5.2955

>NTDB_id=1170998 ACOOFE_RS13790 WP_420415454.1 2924399..2924956(-) (ssb) [MAG: Roseibium sp. isolate 0362df45-af4a-42fd-816a-13a51ea0af63]
MAGSVNKVILVGNLGADPEIRRTQDGRPIANLRIATSESWRDRNSGERREKTEWHRVVIFNEGLCKVAENYLRKGSKVYL
EGQLQTRKWQDQSGQDRYSTEVVLQGFNSNLTMLDGRGEGGGQPGGLPDYGNDQGGGGFGGGSSGGGGFGGGGGGGGYGG
GSSGGGFGGPSGGGGAGPMDDEIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=1170998 ACOOFE_RS13790 WP_420415454.1 2924399..2924956(-) (ssb) [MAG: Roseibium sp. isolate 0362df45-af4a-42fd-816a-13a51ea0af63]
ATGGCGGGAAGCGTCAACAAAGTCATTTTGGTCGGGAATCTTGGGGCGGATCCGGAAATCCGGCGCACCCAGGACGGCCG
TCCGATCGCTAACCTGCGGATCGCCACGTCTGAATCCTGGCGGGACCGCAATTCCGGCGAGCGCCGTGAAAAAACCGAAT
GGCACCGGGTGGTAATCTTCAATGAAGGCCTGTGTAAGGTCGCAGAGAATTACCTGCGCAAGGGCTCCAAGGTATACCTG
GAAGGCCAGCTGCAGACCCGCAAGTGGCAAGACCAATCCGGTCAGGATCGATATTCTACCGAAGTCGTCCTGCAGGGTTT
CAACTCCAACTTGACGATGCTGGATGGCCGCGGCGAGGGCGGTGGCCAACCTGGTGGTTTGCCAGATTACGGCAATGACC
AGGGCGGTGGCGGCTTTGGCGGCGGATCCTCTGGCGGTGGCGGCTTTGGTGGCGGCGGCGGCGGCGGTGGATACGGCGGC
GGCTCATCCGGTGGTGGCTTTGGTGGCCCGTCCGGCGGCGGCGGTGCTGGCCCGATGGACGACGAGATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.668

100

0.497
  ssb Vibrio cholerae strain A1552

49.724

97.838

0.486

Multiple sequence alignment