Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACOMDK_RS17250 Genome accession   NZ_OZ243116
Coordinates   3365459..3366010 (-) Length   183 a.a.
NCBI ID   WP_133949830.1    Uniprot ID   -
Organism   MAG: Roseibium sp. isolate 9d5d47d7-4928-4a6d-b405-c71d4187af45     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3360459..3371010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOMDK_RS17235 - 3360674..3361519 (-) 846 WP_420337699.1 PaaX family transcriptional regulator C-terminal domain-containing protein -
  ACOMDK_RS17240 - 3361701..3362930 (+) 1230 WP_420337700.1 zinc ABC transporter substrate-binding protein -
  ACOMDK_RS17245 - 3363151..3365127 (-) 1977 WP_420337701.1 L,D-transpeptidase family protein -
  ACOMDK_RS17250 ssb 3365459..3366010 (-) 552 WP_133949830.1 single-stranded DNA-binding protein Machinery gene
  ACOMDK_RS17255 uvrA 3366515..3369442 (+) 2928 WP_420337702.1 excinuclease ABC subunit UvrA -
  ACOMDK_RS17260 - 3369682..3369834 (+) 153 WP_420337703.1 DUF1127 domain-containing protein -
  ACOMDK_RS17265 - 3370420..3370569 (+) 150 WP_008194643.1 DUF1127 domain-containing protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 18905.56 Da        Isoelectric Point: 5.2955

>NTDB_id=1170948 ACOMDK_RS17250 WP_133949830.1 3365459..3366010(-) (ssb) [MAG: Roseibium sp. isolate 9d5d47d7-4928-4a6d-b405-c71d4187af45]
MAGSVNKVILVGNLGADPEIRRTQDGRPIANLRIATSESWRDRNSGERREKTEWHRVVIFNEGLCKVAENYLRKGSKVYL
EGQLQTRKWQDQSGQDRYSTEVVLQGFNSNLTMLDGRGEGGGQPGGLPDYGNDQGGGGFGGGSSGGGGGSFGGGGGYGGG
SSGGGFGGPSGGGSGPMDDEIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1170948 ACOMDK_RS17250 WP_133949830.1 3365459..3366010(-) (ssb) [MAG: Roseibium sp. isolate 9d5d47d7-4928-4a6d-b405-c71d4187af45]
ATGGCGGGAAGTGTCAACAAAGTCATTTTGGTTGGGAACCTTGGAGCGGATCCGGAAATCCGGCGCACCCAGGATGGCCG
GCCGATTGCCAATCTGCGGATTGCAACATCCGAATCCTGGCGGGACCGCAATTCCGGCGAGCGCCGCGAAAAAACCGAAT
GGCACCGTGTGGTCATCTTCAATGAAGGCCTATGCAAGGTGGCTGAAAACTATCTTCGCAAAGGCTCCAAGGTCTACCTG
GAAGGCCAGCTGCAAACGCGTAAGTGGCAGGACCAATCCGGGCAGGACCGGTATTCGACCGAAGTCGTGCTGCAAGGGTT
CAACTCCAATCTGACGATGCTTGACGGACGCGGCGAAGGCGGCGGTCAGCCCGGCGGATTGCCGGATTACGGCAATGACC
AGGGCGGCGGCGGATTTGGCGGCGGGTCTTCCGGTGGCGGTGGCGGCAGCTTCGGCGGCGGTGGCGGTTACGGCGGTGGA
TCTTCGGGCGGCGGATTCGGTGGACCGTCCGGCGGTGGCTCCGGCCCAATGGATGATGAAATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.668

100

0.503
  ssb Vibrio cholerae strain A1552

65.289

66.12

0.432

Multiple sequence alignment