Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACOFKY_RS18495 Genome accession   NZ_OZ241355
Coordinates   4003947..4004576 (-) Length   209 a.a.
NCBI ID   WP_419327710.1    Uniprot ID   -
Organism   MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3998947..4009576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOFKY_RS18460 mlaE 3999110..3999889 (+) 780 WP_004725633.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  ACOFKY_RS18465 - 3999889..4000566 (+) 678 WP_244014196.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ACOFKY_RS18470 - 4000588..4001208 (+) 621 WP_004725637.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  ACOFKY_RS18475 - 4001236..4001523 (+) 288 WP_336953480.1 toluene tolerance protein -
  ACOFKY_RS18480 - 4001631..4002644 (-) 1014 WP_004725641.1 magnesium and cobalt transport protein CorA -
  ACOFKY_RS18485 - 4002803..4003420 (+) 618 WP_336953481.1 TIGR00730 family Rossman fold protein -
  ACOFKY_RS18490 - 4003496..4003894 (+) 399 WP_419819899.1 NUDIX hydrolase -
  ACOFKY_RS18495 comF 4003947..4004576 (-) 630 WP_419327710.1 ComF family protein Machinery gene
  ACOFKY_RS18500 recG 4004761..4006806 (-) 2046 WP_419819900.1 ATP-dependent DNA helicase RecG -
  ACOFKY_RS18505 - 4006866..4007651 (+) 786 WP_419819901.1 NAD-dependent epimerase/dehydratase family protein -
  ACOFKY_RS18510 - 4007811..4008260 (+) 450 WP_419819902.1 hypothetical protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24473.76 Da        Isoelectric Point: 9.5114

>NTDB_id=1170800 ACOFKY_RS18495 WP_419327710.1 4003947..4004576(-) (comF) [MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71]
MLQFINQLLHKSIQSISPCLLCGIDQQKKHSLCNDCWAQLPWYKQYIERHQQKILCAHRYDFPIDRIIQVYKYEQQLHYQ
NLLAQSLLNLSLPKIQAIVPMPISNDRLKERGYNQMLIIAKIMARQLNIPVWQPVIREAQHSQKGLSRIERLENIEYQFK
IIKTEKRKFKKILIIDDVVTTGSSIHALTHALENLGCQQIYNACIAAAL

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1170800 ACOFKY_RS18495 WP_419327710.1 4003947..4004576(-) (comF) [MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71]
ATGCTCCAATTTATCAATCAACTTCTCCATAAAAGCATTCAAAGCATTTCCCCTTGCTTACTTTGCGGGATAGATCAACA
AAAAAAGCATTCTCTCTGTAATGATTGTTGGGCACAGCTTCCGTGGTATAAGCAATATATTGAACGGCATCAACAAAAAA
TTCTTTGTGCTCATCGTTATGACTTCCCAATAGATCGCATTATCCAAGTCTATAAATATGAACAACAACTGCATTATCAA
AATCTATTAGCCCAAAGTTTATTAAATTTAAGCTTACCTAAAATTCAGGCCATTGTTCCTATGCCCATTTCTAATGATCG
CTTAAAAGAACGTGGCTACAATCAAATGCTAATTATCGCTAAAATCATGGCAAGACAATTAAACATCCCCGTATGGCAAC
CTGTAATTCGAGAAGCACAACATTCACAAAAAGGGCTAAGCAGAATTGAGCGCTTAGAAAATATTGAATATCAATTTAAA
ATAATTAAAACAGAAAAACGAAAATTTAAAAAAATACTGATTATTGATGATGTCGTGACCACAGGTAGTTCAATTCATGC
TTTAACCCATGCTTTAGAAAACTTAGGATGCCAGCAAATTTATAATGCTTGTATTGCTGCAGCTCTATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

59.33

100

0.593
  comF Acinetobacter baumannii D1279779

58.852

100

0.589

Multiple sequence alignment