Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilS   Type   Regulator
Locus tag   ACOFKY_RS14880 Genome accession   NZ_OZ241355
Coordinates   3217586..3219154 (+) Length   522 a.a.
NCBI ID   WP_336952335.1    Uniprot ID   -
Organism   MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 3212586..3224154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOFKY_RS14865 thrC 3213810..3214949 (+) 1140 WP_336952333.1 threonine synthase -
  ACOFKY_RS14870 pbpG 3215627..3216682 (-) 1056 WP_004718389.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ACOFKY_RS14875 - 3216915..3217550 (+) 636 WP_336952334.1 response regulator -
  ACOFKY_RS14880 pilS 3217586..3219154 (+) 1569 WP_336952335.1 sensor histidine kinase Regulator
  ACOFKY_RS14885 pilR 3219172..3220587 (+) 1416 WP_419819696.1 sigma-54-dependent transcriptional regulator Regulator
  ACOFKY_RS14890 - 3220873..3222051 (-) 1179 WP_336952337.1 S41 family peptidase -
  ACOFKY_RS14895 gpmI 3222082..3223629 (-) 1548 WP_336952339.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence


Protein


Download         Length: 522 a.a.        Molecular weight: 59545.12 Da        Isoelectric Point: 6.1842

>NTDB_id=1170785 ACOFKY_RS14880 WP_336952335.1 3217586..3219154(+) (pilS) [MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71]
MSPTVTVPIYQTIYRLGTLYSGYRLVIAFCLVIIFLITLENQPVHYEYPSLYFYSLTAFTVIAALQMMLLKFYPHGVGQQ
FIGFFIVDIPFLSTLVFALNGPNLAISILFVIAVFTANFLLSKNKALFVTLVSVIAIIYQQFLGSFFDFSNLNNISNSAL
LAFLFFMVYGIGQIAINRFQVLESLNTYQSLELFKLQNINRYILEQIEVGYLVLDEKCKIIVSNPAACLLLGISPLYAHE
QYHLSSFQPDLYEILKDAMLRDGERFQFESHQSSYTVDIRVQKLIVPHQALTLLVLEDAQKINQKVQQLKLAALGQLSAS
IAHEIRNPLAAIAQANDLFISSDPEQQTILNQMITKQTIRINNIIKDTLDMAKNKKIHTSKINFQEFVDDLLRHDLGDAQ
EKIKLEIQADVWIYFDDSHLRQVLINLVRNALRHNDQNAEHILVQTFKNESHVYIDVIDYGKGVTKQDLSQLFQPFFSTE
INGTGLGLYLSQTICEANQAKLIYVEQKQQGACFRIECPLMD

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=1170785 ACOFKY_RS14880 WP_336952335.1 3217586..3219154(+) (pilS) [MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71]
ATGTCGCCTACGGTAACGGTTCCTATTTATCAAACAATTTACCGTCTAGGCACACTGTATTCAGGTTATAGATTGGTTAT
TGCTTTTTGCTTAGTCATTATTTTTCTGATTACTCTTGAAAACCAACCCGTACATTACGAATATCCCAGTTTATATTTTT
ATTCTCTAACCGCGTTTACTGTAATCGCAGCATTACAAATGATGCTGCTCAAATTCTATCCGCATGGTGTGGGGCAGCAA
TTTATTGGTTTTTTTATTGTTGATATTCCATTTCTAAGTACCTTGGTATTTGCCCTCAATGGGCCAAATTTAGCCATCAG
CATTTTGTTTGTCATTGCCGTTTTTACCGCGAATTTTCTGCTTAGTAAAAATAAAGCGCTATTCGTAACACTGGTTTCTG
TGATTGCAATTATTTACCAACAGTTTTTAGGCAGCTTCTTCGATTTTTCAAATTTAAATAATATTAGTAACAGTGCCTTA
TTGGCTTTTTTATTTTTTATGGTTTATGGCATTGGGCAGATTGCAATTAATCGCTTCCAAGTTTTAGAGTCGTTAAATAC
CTATCAATCTCTTGAATTATTTAAGTTACAGAACATTAACCGCTATATTTTAGAACAGATTGAAGTCGGTTATTTGGTGC
TCGATGAAAAATGCAAAATTATCGTCAGTAACCCTGCAGCCTGTTTACTTTTGGGCATTTCACCACTTTACGCACATGAG
CAATATCATTTATCCAGCTTTCAACCGGACTTATATGAAATTTTAAAAGATGCCATGTTACGTGATGGCGAACGCTTTCA
ATTTGAATCCCATCAATCCTCGTATACAGTCGATATTCGCGTACAAAAATTGATTGTTCCGCATCAAGCACTCACGCTTT
TAGTCCTCGAAGATGCACAAAAAATTAATCAAAAGGTACAACAACTCAAACTTGCCGCACTGGGTCAATTATCGGCCAGT
ATTGCCCATGAAATTCGCAATCCGCTTGCCGCCATTGCGCAGGCCAACGACCTGTTTATCAGCAGTGACCCAGAACAGCA
AACCATTTTAAATCAAATGATTACCAAACAGACCATCCGTATCAATAATATTATTAAAGATACCTTGGATATGGCAAAAA
ATAAAAAGATCCATACCTCAAAAATTAATTTTCAAGAATTTGTTGATGACTTATTACGTCATGATTTAGGGGATGCTCAG
GAAAAAATCAAATTAGAAATTCAAGCTGATGTTTGGATCTATTTTGATGATTCTCATCTTCGACAAGTTCTAATCAATTT
AGTGCGTAATGCATTACGTCATAATGATCAAAATGCTGAACACATTTTAGTACAAACGTTTAAAAATGAATCACACGTAT
ATATCGATGTGATTGATTATGGGAAAGGCGTCACAAAACAAGATCTTTCGCAATTATTTCAGCCATTTTTTAGTACCGAA
ATCAATGGAACTGGTTTAGGATTGTACCTATCGCAGACGATATGCGAAGCGAATCAAGCGAAACTAATTTACGTAGAGCA
AAAACAACAAGGGGCATGCTTCCGTATCGAATGCCCACTCATGGATTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

58.008

98.084

0.569


Multiple sequence alignment