Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AW03_RS15570 Genome accession   NZ_CP007173
Coordinates   3015194..3015838 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis HJ5     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3010194..3020838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW03_RS15535 (AW03_029820) mrpB 3011387..3011818 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  AW03_RS15540 (AW03_029830) mrpC 3011818..3012159 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  AW03_RS15545 (AW03_029840) mrpD 3012152..3013633 (+) 1482 WP_015384516.1 Na+/H+ antiporter subunit D -
  AW03_RS15550 (AW03_029850) mrpE 3013639..3014115 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  AW03_RS15555 (AW03_029860) mrpF 3014115..3014399 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  AW03_RS15560 (AW03_029870) mnhG 3014383..3014757 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  AW03_RS15565 (AW03_029880) yuxO 3014796..3015176 (-) 381 WP_015483631.1 hotdog fold thioesterase -
  AW03_RS15570 (AW03_029890) comA 3015194..3015838 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  AW03_RS15575 (AW03_029900) comP 3015919..3018219 (-) 2301 WP_046340263.1 histidine kinase Regulator
  AW03_RS15580 (AW03_029910) comX 3018231..3018395 (-) 165 WP_015384519.1 competence pheromone ComX -
  AW03_RS15585 (AW03_029920) - 3018408..3019268 (-) 861 WP_015483633.1 polyprenyl synthetase family protein -
  AW03_RS15590 (AW03_029930) degQ 3019453..3019593 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  AW03_RS22115 - 3019815..3019877 (+) 63 Protein_3033 hypothetical protein -
  AW03_RS15595 (AW03_029940) - 3020055..3020423 (+) 369 WP_015483634.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=117068 AW03_RS15570 WP_003220716.1 3015194..3015838(-) (comA) [Bacillus subtilis HJ5]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=117068 AW03_RS15570 WP_003220716.1 3015194..3015838(-) (comA) [Bacillus subtilis HJ5]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATCT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment