Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACNAL1_RS07205 Genome accession   NZ_OZ223238
Coordinates   1492035..1492574 (-) Length   179 a.a.
NCBI ID   WP_296593828.1    Uniprot ID   -
Organism   MAG: Roseibium sp. isolate 0fc6a3e5-5e58-4fac-be03-b88af31c51d1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1487035..1497574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNAL1_RS07190 - 1487703..1488959 (+) 1257 WP_415716881.1 zinc ABC transporter substrate-binding protein -
  ACNAL1_RS07195 - 1489015..1491015 (-) 2001 WP_415716883.1 L,D-transpeptidase family protein -
  ACNAL1_RS07200 - 1491511..1491987 (+) 477 WP_415716885.1 hypothetical protein -
  ACNAL1_RS07205 ssb 1492035..1492574 (-) 540 WP_296593828.1 single-stranded DNA-binding protein Machinery gene
  ACNAL1_RS07210 uvrA 1493121..1496051 (+) 2931 WP_415716887.1 excinuclease ABC subunit UvrA -
  ACNAL1_RS07215 - 1496285..1496437 (+) 153 WP_415716889.1 DUF1127 domain-containing protein -
  ACNAL1_RS07220 - 1496845..1496994 (+) 150 WP_296593834.1 DUF1127 domain-containing protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 18596.28 Da        Isoelectric Point: 5.3040

>NTDB_id=1170662 ACNAL1_RS07205 WP_296593828.1 1492035..1492574(-) (ssb) [MAG: Roseibium sp. isolate 0fc6a3e5-5e58-4fac-be03-b88af31c51d1]
MAGSVNKVILVGNLGADPEIRRTQDGRPIANLRIATSESWRDRNSGERREKTEWHRVVIFNEGLCKVAENYLRKGSKVYL
EGQLQTRKWQDQSGQDRYSTEVVLQGFNSNLTMLDGRGEGGGQPGGLPDYGNEPQGGGGGFGGGSGGGYGGGSGSGGGGF
GGQSGGGGGAGPMDDEIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=1170662 ACNAL1_RS07205 WP_296593828.1 1492035..1492574(-) (ssb) [MAG: Roseibium sp. isolate 0fc6a3e5-5e58-4fac-be03-b88af31c51d1]
ATGGCGGGCAGCGTCAACAAAGTAATTTTGGTGGGCAATCTTGGAGCGGATCCCGAAATCCGCAGAACACAGGATGGCCG
CCCCATCGCCAACTTGCGGATCGCGACTTCTGAATCCTGGCGTGACCGTAACTCGGGCGAGCGTCGCGAGAAGACGGAAT
GGCACCGGGTAGTGATCTTCAACGAAGGACTTTGCAAGGTGGCGGAGAACTATCTGCGCAAGGGCTCCAAGGTTTACCTT
GAAGGCCAGCTGCAGACGCGCAAATGGCAGGACCAGTCCGGTCAGGACCGCTATTCAACCGAAGTCGTGCTGCAAGGCTT
CAACTCGAACCTGACCATGCTCGACGGACGTGGCGAAGGCGGTGGCCAGCCTGGCGGATTGCCTGACTACGGCAACGAGC
CCCAGGGCGGCGGAGGCGGCTTTGGGGGCGGTTCCGGCGGAGGCTACGGTGGCGGCTCTGGCAGCGGAGGCGGCGGCTTT
GGTGGCCAATCCGGTGGTGGCGGTGGCGCCGGTCCGATGGACGACGAAATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.387

100

0.503
  ssb Vibrio cholerae strain A1552

65.289

67.598

0.441

Multiple sequence alignment