Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ACLV7D_RS08175 Genome accession   NZ_OZ217345
Coordinates   1704006..1704737 (-) Length   243 a.a.
NCBI ID   WP_173234436.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis F22     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1699006..1709737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7D_RS08150 (SMIF22_16110) - 1699350..1699469 (-) 120 WP_173219790.1 PncF family bacteriocin immunity protein -
  ACLV7D_RS08155 (SMIF22_16130) - 1700173..1701522 (-) 1350 WP_173234444.1 sensor histidine kinase -
  ACLV7D_RS08160 (SMIF22_16140) comE/blpR 1701536..1702273 (-) 738 WP_173234442.1 response regulator transcription factor Regulator
  ACLV7D_RS08165 (SMIF22_16150) - 1702569..1702898 (+) 330 WP_173234440.1 helicase BlpT -
  ACLV7D_RS08170 (SMIF22_16160) pptB 1702960..1704009 (-) 1050 WP_173234438.1 ABC transporter permease Regulator
  ACLV7D_RS08175 (SMIF22_16170) pptA 1704006..1704737 (-) 732 WP_173234436.1 ABC transporter ATP-binding protein Regulator
  ACLV7D_RS08180 (SMIF22_16180) - 1704805..1705215 (+) 411 WP_050275810.1 HIT family protein -
  ACLV7D_RS08185 (SMIF22_16190) - 1705225..1705512 (+) 288 WP_173234434.1 hypothetical protein -
  ACLV7D_RS08190 (SMIF22_16200) dnaJ 1705907..1707046 (-) 1140 WP_173234432.1 molecular chaperone DnaJ -
  ACLV7D_RS08195 (SMIF22_16210) dnaK 1707521..1709344 (-) 1824 WP_000034667.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27042.47 Da        Isoelectric Point: 4.6934

>NTDB_id=1170386 ACLV7D_RS08175 WP_173234436.1 1704006..1704737(-) (pptA) [Streptococcus mitis isolate S. mitis F22]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLTPYSGSININGLTLQEDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIDQKVAFDRVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAIADLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLAQLREAFDMPEASLNDIYLALTKE
EEL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1170386 ACLV7D_RS08175 WP_173234436.1 1704006..1704737(-) (pptA) [Streptococcus mitis isolate S. mitis F22]
ATGTTAGAAATTAAAAACCTGACAGGTGGTTATGTTCATGTCCCTGTCTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGTAAATCGACGACTATCAATGAGATTATCGGTCTGTTGACACCTT
ATAGTGGTTCCATCAATATCAATGGCTTGACCTTGCAAGAAGACGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACACCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTATGGTATTGACCAGAA
AGTGGCTTTTGATCGAGTGGAACCTTTGTTAAAAATGTTCCGTCTGGACCAGAAATTAGATTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAAAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCGAGTCTCTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTGCGGACTTGATTCAGCTTTTGGAAGTGGAAAAGCAAAAAGGCAAGTCCATTCTCAT
GAGTACCCACGTGCTGGATTCGGCTGAGAAGATGTGTGATGCTTTTGTCATTCTTCACAAAGGGGAAGTGCGTGCCAAGG
GGAATTTAGCGCAACTGCGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGAGCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

73.029

99.177

0.724
  pptA Streptococcus thermophilus LMD-9

72.199

99.177

0.716

Multiple sequence alignment